Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC6.47□□□□□ -1.37
COL5A3P25940 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
COL5A3P25940 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC6.47□□□□□ -1.37
COL5A3P25940 CNOT7P1-201ENST00000429006 852 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 ATP6V0E1P2-201ENST00000441771 245 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC6.47□□□□□ -1.37
COL5A3P25940 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A3P25940 RPS23P7-201ENST00000466210 444 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 AC006967.1-201ENST00000467608 589 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 RPS24P16-201ENST00000497294 392 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 AC093720.1-201ENST00000505681 714 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC6.47□□□□□ -1.37
COL5A3P25940 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC6.47□□□□□ -1.37
COL5A3P25940 AC008147.3-201ENST00000548666 354 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A3P25940 AL356317.1-201ENST00000396110 1436 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A3P25940 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A3P25940 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A3P25940 ZNF652P1-201ENST00000442420 1309 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 KYNUP3-201ENST00000574386 1341 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A3P25940 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A3P25940 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A3P25940 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A3P25940 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A3P25940 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A3P25940 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A3P25940 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.47□□□□□ -1.37
COL5A3P25940 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A3P25940 AL590240.1-201ENST00000334118 313 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 COX6CP17-201ENST00000421389 185 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 RPS27AP7-201ENST00000422792 455 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 MRPS21P2-201ENST00000424704 264 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 AC000111.2-201ENST00000448200 210 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 TCEA1P1-201ENST00000449716 880 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 RN7SL481P-201ENST00000477764 299 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC6.47□□□□□ -1.37
COL5A3P25940 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A3P25940 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC6.47□□□□□ -1.37
COL5A3P25940 AP001357.1-201ENST00000586304 1053 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A3P25940 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
COL5A3P25940 AC135068.12-201ENST00000637370 931 ntBASIC6.47□□□□□ -1.37
COL5A3P25940 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A3P25940 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A3P25940 LPP-208ENST00000448637 5835 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A3P25940 DCN-218ENST00000551354 2924 ntTSL 3 BASIC6.47□□□□□ -1.37
COL5A3P25940 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A3P25940 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
COL5A3P25940 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A3P25940 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A3P25940 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
COL5A3P25940 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL5A3P25940 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL5A3P25940 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.46□□□□□ -1.38
COL5A3P25940 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A3P25940 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.46□□□□□ -1.38
COL5A3P25940 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.46□□□□□ -1.38
COL5A3P25940 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC6.46□□□□□ -1.38
COL5A3P25940 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
COL5A3P25940 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A3P25940 RN7SKP185-201ENST00000362813 326 ntBASIC6.46□□□□□ -1.38
COL5A3P25940 U3.10-201ENST00000364459 214 ntBASIC6.46□□□□□ -1.38
COL5A3P25940 U3.30-201ENST00000391308 210 ntBASIC6.46□□□□□ -1.38
COL5A3P25940 ELOCP19-201ENST00000411919 318 ntBASIC6.46□□□□□ -1.38
COL5A3P25940 AC004690.1-201ENST00000418216 328 ntBASIC6.46□□□□□ -1.38
COL5A3P25940 RPL18P10-201ENST00000425606 538 ntBASIC6.46□□□□□ -1.38
COL5A3P25940 DNAJC19P7-201ENST00000428811 344 ntBASIC6.46□□□□□ -1.38
COL5A3P25940 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
COL5A3P25940 AURKAPS2-201ENST00000454983 333 ntBASIC6.46□□□□□ -1.38
COL5A3P25940 SCARNA22-201ENST00000503991 125 ntBASIC6.46□□□□□ -1.38
COL5A3P25940 AC034205.1-201ENST00000520621 638 ntBASIC6.46□□□□□ -1.38
COL5A3P25940 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC6.46□□□□□ -1.38
COL5A3P25940 AC074050.1-201ENST00000563247 211 ntBASIC6.46□□□□□ -1.38
COL5A3P25940 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC6.46□□□□□ -1.38
COL5A3P25940 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC6.46□□□□□ -1.38
COL5A3P25940 AC020910.3-201ENST00000603701 874 ntBASIC6.46□□□□□ -1.38
COL5A3P25940 AC011626.1-201ENST00000604710 562 ntBASIC6.46□□□□□ -1.38
COL5A3P25940 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC6.46□□□□□ -1.38
COL5A3P25940 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A3P25940 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.46□□□□□ -1.38
COL5A3P25940 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A3P25940 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.46□□□□□ -1.38
COL5A3P25940 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC6.46□□□□□ -1.38
COL5A3P25940 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.38
COL5A3P25940 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC6.46□□□□□ -1.38
COL5A3P25940 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC6.45□□□□□ -1.38
COL5A3P25940 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A3P25940 AL356967.1-201ENST00000406305 431 ntBASIC6.45□□□□□ -1.38
COL5A3P25940 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC6.45□□□□□ -1.38
COL5A3P25940 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC6.45□□□□□ -1.38
COL5A3P25940 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC6.45□□□□□ -1.38
COL5A3P25940 AC010733.1-201ENST00000451515 401 ntBASIC6.45□□□□□ -1.38
COL5A3P25940 AP001880.2-201ENST00000538233 448 ntBASIC6.45□□□□□ -1.38
COL5A3P25940 EIF1P5-201ENST00000585002 234 ntBASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms