Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC4.95□□□□□ -1.62
SPTA1P02549 LMO3-204ENST00000354662 3574 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
SPTA1P02549 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC4.94□□□□□ -1.62
SPTA1P02549 OFD1P17-201ENST00000437639 3018 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SPTA1P02549 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.94□□□□□ -1.62
SPTA1P02549 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.94□□□□□ -1.62
SPTA1P02549 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC4.94□□□□□ -1.62
SPTA1P02549 AC110716.2-201ENST00000563865 3945 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SPTA1P02549 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
SPTA1P02549 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
SPTA1P02549 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC4.94□□□□□ -1.62
SPTA1P02549 AL445189.1-201ENST00000405722 338 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 RNU2-50P-201ENST00000410494 143 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 RN7SKP263-201ENST00000411194 309 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 RPSAP35-201ENST00000413753 818 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC4.94□□□□□ -1.62
SPTA1P02549 LDHAP2-201ENST00000437325 985 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.94□□□□□ -1.62
SPTA1P02549 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC4.94□□□□□ -1.62
SPTA1P02549 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC4.94□□□□□ -1.62
SPTA1P02549 OR7H2P-201ENST00000513483 306 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 AC138701.1-201ENST00000524329 714 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 MIR5095-201ENST00000578844 88 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 AL391358.1-201ENST00000605342 190 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 MIR6716-201ENST00000613413 80 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 AC232271.1-201ENST00000602455 2715 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SPTA1P02549 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SPTA1P02549 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.94□□□□□ -1.62
SPTA1P02549 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SPTA1P02549 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SPTA1P02549 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
SPTA1P02549 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC4.94□□□□□ -1.62
SPTA1P02549 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SPTA1P02549 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.94□□□□□ -1.62
SPTA1P02549 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC4.94□□□□□ -1.62
SPTA1P02549 YWHABP1-201ENST00000445359 727 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 RNU1-88P-201ENST00000459274 128 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC4.94□□□□□ -1.62
SPTA1P02549 AC006130.2-201ENST00000586202 326 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SPTA1P02549 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.94□□□□□ -1.62
SPTA1P02549 AC015660.5-201ENST00000623238 564 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 AC034229.5-201ENST00000624258 185 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC4.94□□□□□ -1.62
SPTA1P02549 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.94□□□□□ -1.62
SPTA1P02549 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC4.94□□□□□ -1.62
SPTA1P02549 AL450345.1-202ENST00000605741 3881 ntBASIC4.94□□□□□ -1.62
SPTA1P02549 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
SPTA1P02549 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SPTA1P02549 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
SPTA1P02549 AC005618.1-201ENST00000606901 3148 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.93□□□□□ -1.62
SPTA1P02549 AC020656.2-201ENST00000613291 5309 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC4.93□□□□□ -1.62
SPTA1P02549 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
SPTA1P02549 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
SPTA1P02549 MIR640-201ENST00000385086 96 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 AL050305.1-201ENST00000399993 1230 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.93□□□□□ -1.62
SPTA1P02549 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC4.93□□□□□ -1.62
SPTA1P02549 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.93□□□□□ -1.62
SPTA1P02549 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC4.93□□□□□ -1.62
SPTA1P02549 KNOP1P3-201ENST00000446933 426 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 RPS27AP3-201ENST00000453803 454 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC4.93□□□□□ -1.62
SPTA1P02549 TRBV5-2-201ENST00000489095 273 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
SPTA1P02549 MTND6P2-201ENST00000512226 524 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SPTA1P02549 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
SPTA1P02549 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
SPTA1P02549 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 AC005224.3-201ENST00000584683 2140 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SPTA1P02549 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
SPTA1P02549 LINC01616-201ENST00000561816 2280 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
SPTA1P02549 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SPTA1P02549 AL122126.1-201ENST00000546905 1318 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SPTA1P02549 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SPTA1P02549 AC008072.1-201ENST00000434254 824 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 AC026688.1-201ENST00000520639 1168 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC4.93□□□□□ -1.62
SPTA1P02549 CYCSP29-201ENST00000533731 318 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 AP006289.1-201ENST00000538089 277 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.93□□□□□ -1.62
SPTA1P02549 MIR4277-201ENST00000578298 84 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 AC011487.3-201ENST00000593607 453 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 AC006338.2-201ENST00000616864 791 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.93□□□□□ -1.62
SPTA1P02549 AC092692.1-201ENST00000623625 2595 ntBASIC4.93□□□□□ -1.62
SPTA1P02549 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC4.93□□□□□ -1.62
SPTA1P02549 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms