Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC016252.1-201ENST00000609721 474 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 AL590396.2-201ENST00000636511 1041 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
COL3A1P02461 CASC19-222ENST00000641321 1173 ntBASIC6.92□□□□□ -1.3
COL3A1P02461 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL3A1P02461 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL3A1P02461 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
COL3A1P02461 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC6.91□□□□□ -1.3
COL3A1P02461 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL3A1P02461 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL3A1P02461 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.91□□□□□ -1.3
COL3A1P02461 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
COL3A1P02461 AC092681.1-201ENST00000297369 291 ntBASIC6.91□□□□□ -1.3
COL3A1P02461 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL3A1P02461 RNU4-4P-201ENST00000364588 130 ntBASIC6.91□□□□□ -1.3
COL3A1P02461 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC6.91□□□□□ -1.3
COL3A1P02461 RBMY2QP-201ENST00000429799 1147 ntBASIC6.91□□□□□ -1.3
COL3A1P02461 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC6.91□□□□□ -1.3
COL3A1P02461 AC090018.1-201ENST00000434369 367 ntBASIC6.91□□□□□ -1.3
COL3A1P02461 AC093414.1-201ENST00000434712 514 ntBASIC6.91□□□□□ -1.3
COL3A1P02461 AC046176.1-201ENST00000435260 1170 ntBASIC6.91□□□□□ -1.3
COL3A1P02461 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC6.91□□□□□ -1.3
COL3A1P02461 GAPDHP58-201ENST00000438477 1006 ntBASIC6.91□□□□□ -1.3
COL3A1P02461 ZNF733P-202ENST00000444809 1573 ntBASIC6.91□□□□□ -1.3
COL3A1P02461 AC115223.1-201ENST00000466377 870 ntBASIC6.91□□□□□ -1.3
COL3A1P02461 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.91□□□□□ -1.3
COL3A1P02461 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.91□□□□□ -1.3
COL3A1P02461 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC6.91□□□□□ -1.3
COL3A1P02461 OR10G5P-201ENST00000532733 358 ntBASIC6.91□□□□□ -1.3
COL3A1P02461 AL451064.1-201ENST00000607718 471 ntBASIC6.91□□□□□ -1.3
COL3A1P02461 AL138960.2-201ENST00000625145 535 ntBASIC6.91□□□□□ -1.3
COL3A1P02461 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL3A1P02461 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC6.9□□□□□ -1.3
COL3A1P02461 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.9□□□□□ -1.3
COL3A1P02461 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.9□□□□□ -1.3
COL3A1P02461 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC6.9□□□□□ -1.3
COL3A1P02461 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.9□□□□□ -1.3
COL3A1P02461 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
COL3A1P02461 RN7SKP95-201ENST00000362860 303 ntBASIC6.9□□□□□ -1.31
COL3A1P02461 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC6.9□□□□□ -1.31
COL3A1P02461 HNRNPA1P29-201ENST00000426409 879 ntBASIC6.9□□□□□ -1.31
COL3A1P02461 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC6.9□□□□□ -1.31
COL3A1P02461 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC6.9□□□□□ -1.31
COL3A1P02461 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC6.9□□□□□ -1.31
COL3A1P02461 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC6.9□□□□□ -1.31
COL3A1P02461 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC6.9□□□□□ -1.31
COL3A1P02461 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC6.9□□□□□ -1.31
COL3A1P02461 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC6.9□□□□□ -1.31
COL3A1P02461 RNA5SP43-201ENST00000516559 110 ntBASIC6.9□□□□□ -1.31
COL3A1P02461 AC092709.1-201ENST00000521355 1045 ntBASIC6.9□□□□□ -1.31
COL3A1P02461 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC6.9□□□□□ -1.31
COL3A1P02461 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC6.9□□□□□ -1.31
COL3A1P02461 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC6.9□□□□□ -1.31
COL3A1P02461 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL3A1P02461 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC6.9□□□□□ -1.31
COL3A1P02461 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL3A1P02461 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL3A1P02461 HSPA8P18-201ENST00000439846 1928 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
COL3A1P02461 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL3A1P02461 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.89□□□□□ -1.31
COL3A1P02461 RNU11-201ENST00000387069 134 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 AC136624.1-201ENST00000400791 413 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 AL589647.1-201ENST00000402485 466 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC6.89□□□□□ -1.31
COL3A1P02461 RNU6-233P-201ENST00000410845 141 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 RPS26P13-201ENST00000419030 330 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC6.89□□□□□ -1.31
COL3A1P02461 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC6.89□□□□□ -1.31
COL3A1P02461 TRY2P-201ENST00000448860 689 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 AC020779.1-201ENST00000478757 796 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 AC109462.1-201ENST00000491087 368 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC6.89□□□□□ -1.31
COL3A1P02461 AC118282.1-201ENST00000506408 765 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC6.89□□□□□ -1.31
COL3A1P02461 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC6.89□□□□□ -1.31
COL3A1P02461 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC6.89□□□□□ -1.31
COL3A1P02461 AC021193.1-201ENST00000511607 420 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 AC004980.4-201ENST00000513375 203 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC6.89□□□□□ -1.31
COL3A1P02461 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC6.89□□□□□ -1.31
COL3A1P02461 AL360012.1-201ENST00000602813 131 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 MEMO1P5-201ENST00000604810 406 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 AC099494.2-201ENST00000623371 978 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC6.89□□□□□ -1.31
COL3A1P02461 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL3A1P02461 NXF4-202ENST00000416098 1465 ntBASIC6.89□□□□□ -1.31
COL3A1P02461 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
COL3A1P02461 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL3A1P02461 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL3A1P02461 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL3A1P02461 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC6.89□□□□□ -1.31
COL3A1P02461 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC6.89□□□□□ -1.31
COL3A1P02461 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
COL3A1P02461 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL3A1P02461 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
COL3A1P02461 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL3A1P02461 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL3A1P02461 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL3A1P02461 RNA5SP305-201ENST00000362665 119 ntBASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms