Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC6.78□□□□□ -1.32
SHANK3Q9BYB0 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.78□□□□□ -1.32
SHANK3Q9BYB0 EDDM3DP-201ENST00000554692 434 ntBASIC6.78□□□□□ -1.32
SHANK3Q9BYB0 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC6.78□□□□□ -1.32
SHANK3Q9BYB0 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SHANK3Q9BYB0 AC021483.2-201ENST00000567415 758 ntBASIC6.78□□□□□ -1.32
SHANK3Q9BYB0 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC6.78□□□□□ -1.32
SHANK3Q9BYB0 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SHANK3Q9BYB0 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
SHANK3Q9BYB0 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC6.78□□□□□ -1.32
SHANK3Q9BYB0 AC003973.3-201ENST00000624863 2822 ntBASIC6.78□□□□□ -1.32
SHANK3Q9BYB0 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.32
SHANK3Q9BYB0 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC6.77□□□□□ -1.32
SHANK3Q9BYB0 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.32
SHANK3Q9BYB0 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.77□□□□□ -1.32
SHANK3Q9BYB0 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 RNU1-85P-201ENST00000364127 164 ntBASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 HMGB3P7-201ENST00000400214 611 ntBASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 CHEK2P3-201ENST00000416118 248 ntBASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 AURKAPS2-201ENST00000454983 333 ntBASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 AC097173.1-201ENST00000505862 819 ntBASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 RNA5SP392-201ENST00000516905 112 ntBASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 AC027667.1-201ENST00000545814 304 ntBASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 FCF1-203ENST00000553615 954 ntTSL 3 BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 MIR3667-201ENST00000581025 74 ntBASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 AC144833.1-201ENST00000567953 4089 ntBASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
SHANK3Q9BYB0 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AC093720.1-201ENST00000505681 714 ntBASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 ASB8-204ENST00000536071 568 ntTSL 4 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AC009027.1-201ENST00000604510 479 ntBASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 CCDC162P-202ENST00000368966 6751 ntBASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AL132640.2-201ENST00000559968 1698 ntBASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 RTTN-222ENST00000640769 8088 ntAPPRIS P1 TSL 2 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 RN7SKP227-201ENST00000364445 330 ntBASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 NUDT19P3-201ENST00000404698 555 ntBASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 LINC01881-201ENST00000416103 412 ntBASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 OR4A17P-201ENST00000526032 904 ntBASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AC092653.1-201ENST00000608509 531 ntBASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AL445423.1-201ENST00000609941 536 ntBASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AC015712.7-201ENST00000615211 635 ntBASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SHANK3Q9BYB0 AC016251.2-201ENST00000623393 3089 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC6.75□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms