Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL513164.1-201ENST00000423268 311 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 FDPSP1-201ENST00000424976 1071 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 IPMKP1-201ENST00000425988 855 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 MTND1P2-201ENST00000430604 821 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC105052.2-201ENST00000434317 794 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 RPS19P6-201ENST00000441327 433 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AL031316.1-202ENST00000441672 449 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AL672138.1-201ENST00000450604 1015 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 TRGVB-201ENST00000453257 471 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC019080.2-201ENST00000453859 394 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 TRBV5-4-201ENST00000454561 544 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 RN7SL251P-201ENST00000464175 297 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 RPSAP48-201ENST00000466509 889 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC092757.1-201ENST00000467293 467 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC040975.1-201ENST00000472104 316 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 RPS3AP17-201ENST00000472594 777 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 RN7SL563P-201ENST00000481233 298 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 RN7SL37P-201ENST00000490461 307 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC008040.4-201ENST00000494834 768 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC108475.1-201ENST00000507880 950 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 RNU6-488P-201ENST00000515918 99 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 RNU6-347P-201ENST00000516658 105 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC027541.1-201ENST00000519306 485 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 ST13P6-201ENST00000522430 1102 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 OR5M7P-201ENST00000526140 972 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 MTND4LP18-201ENST00000526864 291 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 EIF4A2P5-201ENST00000529914 499 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC122688.2-201ENST00000543922 585 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 VDAC2P2-201ENST00000544463 901 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AL358913.1-201ENST00000554342 121 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 COX6CP11-201ENST00000555293 229 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 GNG2-215ENST00000557376 573 ntTSL 4 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC010333.1-201ENST00000563116 563 ntTSL 4 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC026458.1-201ENST00000564330 438 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC091304.4-201ENST00000565703 620 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 MIR3913-1-201ENST00000577744 102 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AP005202.2-201ENST00000582386 658 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AL022154.1-201ENST00000604698 785 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AP000860.1-201ENST00000605250 559 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC097468.3-201ENST00000607956 456 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC108861.1-201ENST00000611634 585 ntTSL 4 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC243654.2-201ENST00000612843 443 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 FAM27E3-202ENST00000614611 340 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC244196.5-201ENST00000617347 406 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 PART1_3.1-201ENST00000619680 131 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AP000577.1-201ENST00000624366 878 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 LINC01232-205ENST00000630421 1002 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 MEF2C-232ENST00000629612 2851 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 ARHGAP24-202ENST00000395183 2740 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC007993.1-201ENST00000621298 2430 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 TBX5-202ENST00000349716 3585 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 ETS1-202ENST00000392668 5139 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 OSBPL9-202ENST00000371714 3352 ntAPPRIS ALT1 TSL 2 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 PDE4D-210ENST00000503258 2860 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 ARHGAP42P4-201ENST00000549782 2934 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 GPR19-201ENST00000332427 1743 ntAPPRIS P1 TSL 4 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 MPPED2-201ENST00000358117 2405 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 OR4Q2-201ENST00000541415 2778 ntAPPRIS P5 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AQP4-AS1-201ENST00000568797 3119 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 ADGRA3-209ENST00000508133 1572 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC109361.1-201ENST00000513220 3526 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC004014.2-201ENST00000623718 5122 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 ECI2-204ENST00000380125 1405 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 TEKT1-201ENST00000338694 3421 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 GLYATL1P1-201ENST00000528297 1607 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms