Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL162739.1-201ENST00000450606 307 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC7.21□□□□□ -1.26
HMGB1P09429 AP002453.1-201ENST00000492327 668 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 RFESD-208ENST00000513950 464 ntTSL 5 BASIC7.21□□□□□ -1.26
HMGB1P09429 RN7SKP67-201ENST00000515905 235 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 AC116917.1-201ENST00000520558 305 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
HMGB1P09429 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC7.21□□□□□ -1.26
HMGB1P09429 AC130365.2-201ENST00000525882 1201 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC7.21□□□□□ -1.26
HMGB1P09429 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC7.21□□□□□ -1.26
HMGB1P09429 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC7.21□□□□□ -1.26
HMGB1P09429 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC7.21□□□□□ -1.26
HMGB1P09429 AC068446.3-201ENST00000555285 382 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC7.21□□□□□ -1.26
HMGB1P09429 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC7.21□□□□□ -1.26
HMGB1P09429 AL078601.3-201ENST00000573303 535 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC7.21□□□□□ -1.26
HMGB1P09429 MIR4701-201ENST00000583094 63 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 MIR132-201ENST00000591554 101 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC7.21□□□□□ -1.26
HMGB1P09429 AC022919.1-201ENST00000624979 626 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 5S_rRNA.29-201ENST00000641250 107 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
HMGB1P09429 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
HMGB1P09429 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
HMGB1P09429 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
HMGB1P09429 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
HMGB1P09429 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
HMGB1P09429 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
HMGB1P09429 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
HMGB1P09429 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC7.2□□□□□ -1.26
HMGB1P09429 AC092070.2-203ENST00000598377 3644 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
HMGB1P09429 AC005725.1-201ENST00000577346 2607 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 AL137100.1-201ENST00000556703 1620 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
HMGB1P09429 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC7.2□□□□□ -1.26
HMGB1P09429 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
HMGB1P09429 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
HMGB1P09429 RNA5SP375-201ENST00000362975 119 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 SNORD1C-201ENST00000363315 78 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 RNU6-792P-201ENST00000363490 107 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 TINAG-203ENST00000370869 782 ntTSL 3 BASIC7.2□□□□□ -1.26
HMGB1P09429 AC019155.1-201ENST00000382242 574 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 HMGB3P18-201ENST00000406327 590 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 PTGES3P2-201ENST00000407942 482 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 RPS26P38-201ENST00000414476 348 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 AC234782.4-201ENST00000417646 1048 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 OR6C64P-201ENST00000419708 825 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 AC092865.3-201ENST00000425390 1026 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 RPSAP32-201ENST00000432681 526 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC7.2□□□□□ -1.26
HMGB1P09429 TRIM60P16-201ENST00000444048 694 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC7.2□□□□□ -1.26
HMGB1P09429 AC017099.1-201ENST00000448261 1028 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 AC002553.3-201ENST00000453002 341 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 AC098818.1-201ENST00000478593 252 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC7.2□□□□□ -1.26
HMGB1P09429 AC008628.1-201ENST00000508663 265 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 AC133963.2-201ENST00000513686 578 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 OR4A41P-201ENST00000533053 928 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC7.2□□□□□ -1.26
HMGB1P09429 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
HMGB1P09429 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC7.2□□□□□ -1.26
HMGB1P09429 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC7.2□□□□□ -1.26
HMGB1P09429 DPRXP4-201ENST00000578053 568 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC7.2□□□□□ -1.26
HMGB1P09429 SMIM12P1-201ENST00000603004 274 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 AC100847.1-201ENST00000611316 481 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 AC096861.1-201ENST00000616652 240 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC7.2□□□□□ -1.26
HMGB1P09429 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC7.2□□□□□ -1.26
HMGB1P09429 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC7.2□□□□□ -1.26
HMGB1P09429 AC083865.1-201ENST00000636634 831 ntBASIC7.2□□□□□ -1.26
HMGB1P09429 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
HMGB1P09429 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC7.2□□□□□ -1.26
HMGB1P09429 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
HMGB1P09429 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
HMGB1P09429 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC7.19□□□□□ -1.26
HMGB1P09429 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
HMGB1P09429 VN2R3P-201ENST00000422626 1412 ntBASIC7.19□□□□□ -1.26
HMGB1P09429 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
HMGB1P09429 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
HMGB1P09429 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
HMGB1P09429 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
HMGB1P09429 Y_RNA.110-201ENST00000363220 99 ntBASIC7.19□□□□□ -1.26
HMGB1P09429 SNORA77.2-201ENST00000408571 112 ntBASIC7.19□□□□□ -1.26
HMGB1P09429 MYL6P5-201ENST00000412707 459 ntBASIC7.19□□□□□ -1.26
HMGB1P09429 AL096829.1-201ENST00000413677 457 ntBASIC7.19□□□□□ -1.26
HMGB1P09429 AL035422.1-201ENST00000414193 397 ntBASIC7.19□□□□□ -1.26
HMGB1P09429 AC009506.2-201ENST00000420635 840 ntBASIC7.19□□□□□ -1.26
HMGB1P09429 AC019205.1-201ENST00000421830 730 ntBASIC7.19□□□□□ -1.26
HMGB1P09429 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC7.19□□□□□ -1.26
HMGB1P09429 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC7.19□□□□□ -1.26
HMGB1P09429 CCNB1IP1P1-201ENST00000428976 839 ntBASIC7.19□□□□□ -1.26
HMGB1P09429 AL365220.1-201ENST00000432923 399 ntBASIC7.19□□□□□ -1.26
HMGB1P09429 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC7.19□□□□□ -1.26
HMGB1P09429 AC124945.1-201ENST00000485133 188 ntBASIC7.19□□□□□ -1.26
HMGB1P09429 UBA52P3-201ENST00000491303 382 ntBASIC7.19□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms