Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 RN7SKP238-201ENST00000516483 249 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 HMGB1P19-201ENST00000517578 577 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 AC113191.1-201ENST00000517759 403 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 TRAV11-201ENST00000539512 339 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 OR11H3P-201ENST00000554547 982 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 FAM27E4-201ENST00000605259 342 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 AC025574.2-201ENST00000615621 514 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 AC135068.5-201ENST00000624197 983 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 DDX18P6-201ENST00000450119 1997 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC28BQ9BUN5 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 RNU4-44P-201ENST00000363050 141 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 GCNT1P4-201ENST00000404096 329 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 RPL12P9-201ENST00000412942 488 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 Z68694.1-201ENST00000413929 841 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AL022331.1-201ENST00000429025 477 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AC006335.2-201ENST00000437993 330 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 RPL12P49-201ENST00000441100 121 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 SNRPCP11-201ENST00000492453 205 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AC018639.1-201ENST00000492994 442 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AL671862.1-201ENST00000515851 349 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 RNA5SP464-201ENST00000516251 108 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AC100784.1-201ENST00000522790 310 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AC084033.1-201ENST00000550830 633 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AL596275.2-207ENST00000641188 675 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AL596275.2-204ENST00000641628 552 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 AL596275.2-206ENST00000641957 626 ntBASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC28BQ9BUN5 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 LYARP1-201ENST00000436977 1501 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 NAP1L4P3-201ENST00000432820 1147 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 ATP5LP2-201ENST00000440646 311 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AL450023.1-201ENST00000450868 751 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AC023194.2-201ENST00000465398 406 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AC106822.1-201ENST00000502647 526 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AC112484.3-201ENST00000505910 329 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 127.4 ms