Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC109638.1-201ENST00000417406 326 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 OR8F1P-201ENST00000425243 930 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 RPL37P1-201ENST00000432310 284 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AL355483.3-201ENST00000446686 752 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AL591379.2-201ENST00000450223 397 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 USP9YP12-201ENST00000450481 570 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC002368.1-201ENST00000456981 388 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC097493.1-201ENST00000463958 372 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC091564.1-201ENST00000464563 479 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 RN7SL228P-201ENST00000470060 303 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC017015.1-201ENST00000477387 286 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 RN7SL282P-201ENST00000479676 297 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 LARP1BP2-201ENST00000486594 519 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 RPL7P24-201ENST00000493052 752 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC023424.2-201ENST00000493479 777 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC108941.1-201ENST00000502853 530 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC025176.1-201ENST00000510261 365 ntTSL 4 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 RNA5SP216-201ENST00000516111 123 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 PAICSP4-201ENST00000517543 1253 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC013828.2-201ENST00000532487 235 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 SAA3P-201ENST00000533267 365 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 ORMDL2-203ENST00000548974 671 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 HSPE1P2-201ENST00000554777 306 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 ZNF519P2-201ENST00000557032 169 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 DRAIC-206ENST00000559029 309 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 BNIP3P8-201ENST00000597863 560 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 BNIP3P11-201ENST00000603878 563 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC097381.3-201ENST00000608962 462 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AL139123.1-201ENST00000612008 430 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 LINC00923-204ENST00000614972 1181 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC008250.2-201ENST00000615261 205 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AL354733.2-202ENST00000615485 742 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC016769.4-201ENST00000616893 535 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 U4.5-201ENST00000617137 123 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC138649.3-201ENST00000622154 254 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AL157786.1-207ENST00000627771 695 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 CRYM-AS1-204ENST00000637983 556 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 OR2L1P-202ENST00000641567 1023 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AL596275.2-203ENST00000641951 371 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 CASC19-205ENST00000641013 1411 ntBASIC5.7□□□□□ -1.5
CCDC140Q96MF4 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 EHHADH-201ENST00000231887 3850 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 IARS-205ENST00000443024 4341 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 HDAC9-218ENST00000456174 2307 ntTSL 2 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 MRPS18C-201ENST00000295491 1643 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 BCL2L14-211ENST00000586576 1927 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
CCDC140Q96MF4 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC006019.2-201ENST00000451116 3044 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 STK33-201ENST00000315204 2707 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 RBM46-201ENST00000281722 2583 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC022031.1-201ENST00000585985 2593 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 HEATR9-207ENST00000604834 1974 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 ELF2P3-201ENST00000445099 1506 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AGBL1-205ENST00000635782 3201 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 OR51L1-201ENST00000321543 948 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 LELP1-201ENST00000368747 523 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 ALOX5AP-201ENST00000380490 904 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AL121972.1-201ENST00000402023 252 ntBASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AGR3-202ENST00000402239 563 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AC096570.1-201ENST00000419013 569 ntTSL 4 BASIC5.69□□□□□ -1.5
CCDC140Q96MF4 AL596451.1-201ENST00000419824 572 ntTSL 5 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms