Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC7.92□□□□□ -1.14
HLA-CQ95604 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC7.92□□□□□ -1.14
HLA-CQ95604 C14orf2-209ENST00000554880 707 ntAPPRIS P1 TSL 3 BASIC7.92□□□□□ -1.14
HLA-CQ95604 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC7.92□□□□□ -1.14
HLA-CQ95604 AC137056.1-202ENST00000575772 753 ntTSL 2 BASIC7.92□□□□□ -1.14
HLA-CQ95604 MIR3171-201ENST00000584270 74 ntBASIC7.92□□□□□ -1.14
HLA-CQ95604 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC7.92□□□□□ -1.14
HLA-CQ95604 AL589863.1-201ENST00000595383 631 ntBASIC7.92□□□□□ -1.14
HLA-CQ95604 AC011500.1-201ENST00000601963 469 ntBASIC7.92□□□□□ -1.14
HLA-CQ95604 AC136443.5-201ENST00000603741 370 ntBASIC7.92□□□□□ -1.14
HLA-CQ95604 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC7.92□□□□□ -1.14
HLA-CQ95604 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC7.92□□□□□ -1.14
HLA-CQ95604 MIR6861-201ENST00000618657 64 ntBASIC7.92□□□□□ -1.14
HLA-CQ95604 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC7.92□□□□□ -1.14
HLA-CQ95604 AC244196.1-201ENST00000620569 409 ntAPPRIS P1 BASIC7.92□□□□□ -1.14
HLA-CQ95604 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
HLA-CQ95604 7SK.10-201ENST00000621414 298 ntBASIC7.92□□□□□ -1.14
HLA-CQ95604 RMST_7.1-201ENST00000621935 268 ntBASIC7.92□□□□□ -1.14
HLA-CQ95604 TEX41-265ENST00000627785 704 ntTSL 5 BASIC7.92□□□□□ -1.14
HLA-CQ95604 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC7.92□□□□□ -1.14
HLA-CQ95604 CREB1-201ENST00000353267 7588 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
HLA-CQ95604 PARP9-201ENST00000360356 3198 ntAPPRIS P3 TSL 1 (best) BASIC7.92□□□□□ -1.14
HLA-CQ95604 CU633906.2-201ENST00000624576 2257 ntTSL 5 BASIC7.92□□□□□ -1.14
HLA-CQ95604 CAPN3-206ENST00000397163 3228 ntAPPRIS ALT1 TSL 1 (best) BASIC7.92□□□□□ -1.14
HLA-CQ95604 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC7.92□□□□□ -1.14
HLA-CQ95604 AGXT2-201ENST00000231420 2364 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
HLA-CQ95604 NR1I3-202ENST00000367980 1403 ntTSL 5 BASIC7.92□□□□□ -1.14
HLA-CQ95604 CA1-225ENST00000626824 2405 ntTSL 5 BASIC7.92□□□□□ -1.14
HLA-CQ95604 FGD6-201ENST00000343958 9288 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
HLA-CQ95604 MYRFL-203ENST00000547771 3465 ntAPPRIS ALT2 TSL 5 BASIC7.92□□□□□ -1.14
HLA-CQ95604 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC7.92□□□□□ -1.14
HLA-CQ95604 ZNF343-201ENST00000278772 3632 ntAPPRIS P3 TSL 2 BASIC7.92□□□□□ -1.14
HLA-CQ95604 BUB1B-202ENST00000412359 3628 ntTSL 2 BASIC7.92□□□□□ -1.14
HLA-CQ95604 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
HLA-CQ95604 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC7.92□□□□□ -1.14
HLA-CQ95604 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC7.92□□□□□ -1.14
HLA-CQ95604 CPSF7-206ENST00000448745 1749 ntAPPRIS ALT1 TSL 5 BASIC7.92□□□□□ -1.14
HLA-CQ95604 AF131215.2-201ENST00000531549 1710 ntBASIC7.92□□□□□ -1.14
HLA-CQ95604 IL2RB-201ENST00000216223 4113 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
HLA-CQ95604 EIF4B-201ENST00000262056 4148 ntAPPRIS P3 TSL 1 (best) BASIC7.92□□□□□ -1.14
HLA-CQ95604 TROVE2-201ENST00000367441 1791 ntAPPRIS P3 TSL 1 (best) BASIC7.92□□□□□ -1.14
HLA-CQ95604 AC006511.3-201ENST00000624929 1783 ntBASIC7.92□□□□□ -1.14
HLA-CQ95604 MTND5P3-201ENST00000438536 1800 ntBASIC7.92□□□□□ -1.14
HLA-CQ95604 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC7.92□□□□□ -1.14
HLA-CQ95604 AC009053.1-202ENST00000563377 2051 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 HMSD-201ENST00000408945 2101 ntAPPRIS P1 TSL 3 BASIC7.91□□□□□ -1.14
HLA-CQ95604 SLFN11-202ENST00000394566 5030 ntAPPRIS P1 TSL 2 BASIC7.91□□□□□ -1.14
HLA-CQ95604 FAR2-202ENST00000536681 3616 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
HLA-CQ95604 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC7.91□□□□□ -1.14
HLA-CQ95604 MFAP5-203ENST00000433590 2308 ntTSL 2 BASIC7.91□□□□□ -1.14
HLA-CQ95604 NCKAP5-204ENST00000409213 2390 ntAPPRIS ALT2 TSL 5 BASIC7.91□□□□□ -1.14
HLA-CQ95604 ZNF468-201ENST00000243639 4027 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
HLA-CQ95604 HMGCLL1-201ENST00000274901 2475 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
HLA-CQ95604 NEK10-201ENST00000295720 2871 ntTSL 2 BASIC7.91□□□□□ -1.14
HLA-CQ95604 ANKS1B-213ENST00000549025 2973 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
HLA-CQ95604 AL031118.1-201ENST00000607727 2955 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 GJA5-202ENST00000579774 3181 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
HLA-CQ95604 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC7.91□□□□□ -1.14
HLA-CQ95604 ADD2-204ENST00000407644 3741 ntAPPRIS P4 TSL 1 (best) BASIC7.91□□□□□ -1.14
HLA-CQ95604 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
HLA-CQ95604 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC7.91□□□□□ -1.14
HLA-CQ95604 RNA5SP122-201ENST00000384457 108 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 RNU6-809P-201ENST00000384461 107 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 AL356967.1-201ENST00000406305 431 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
HLA-CQ95604 REG3G-203ENST00000409471 575 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
HLA-CQ95604 AC009310.1-201ENST00000414414 451 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC7.91□□□□□ -1.14
HLA-CQ95604 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
HLA-CQ95604 LINC01980-202ENST00000425195 491 ntTSL 3 BASIC7.91□□□□□ -1.14
HLA-CQ95604 AC011747.1-201ENST00000425678 565 ntTSL 4 BASIC7.91□□□□□ -1.14
HLA-CQ95604 ISCA1P6-201ENST00000427740 390 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 MRPL50P4-201ENST00000446432 475 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 AL354714.5-201ENST00000450131 590 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 AC103563.5-201ENST00000455643 364 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC7.91□□□□□ -1.14
HLA-CQ95604 AP003385.3-201ENST00000472498 287 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 AC023194.1-201ENST00000493084 308 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 AC106872.3-201ENST00000495104 446 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 AC017037.1-201ENST00000508460 471 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 AC034159.1-201ENST00000513885 583 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 RNU6-583P-201ENST00000516012 92 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 RNU2-46P-201ENST00000517038 113 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 AC116917.1-201ENST00000520558 305 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 AC027309.2-201ENST00000520566 192 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 AP004833.3-201ENST00000531893 322 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC7.91□□□□□ -1.14
HLA-CQ95604 LAMTOR5-AS1-207ENST00000590826 574 ntTSL 4 BASIC7.91□□□□□ -1.14
HLA-CQ95604 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC7.91□□□□□ -1.14
HLA-CQ95604 AC068790.5-201ENST00000602741 355 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 AC000068.3-201ENST00000607934 427 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 AC233702.2-201ENST00000618784 583 ntTSL 4 BASIC7.91□□□□□ -1.14
HLA-CQ95604 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC7.91□□□□□ -1.14
HLA-CQ95604 AC119674.1-212ENST00000641155 993 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 SKIV2L2-201ENST00000230640 4192 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
HLA-CQ95604 NSD2-219ENST00000508803 4251 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
HLA-CQ95604 COMMD3-BMI1-205ENST00000602390 1419 ntAPPRIS P1 TSL 2 BASIC7.91□□□□□ -1.14
HLA-CQ95604 AL356361.1-201ENST00000400943 1459 ntBASIC7.91□□□□□ -1.14
HLA-CQ95604 CCL16-205ENST00000611905 1506 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
HLA-CQ95604 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms