Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.29□□□□□ -1.4
USP39Q53GS9 AC010503.3-201ENST00000594355 540 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.29□□□□□ -1.4
USP39Q53GS9 AC021851.1-201ENST00000608537 1082 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
USP39Q53GS9 AL137246.2-201ENST00000613439 662 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC6.29□□□□□ -1.4
USP39Q53GS9 AC245389.2-201ENST00000616023 576 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 AC242843.1-201ENST00000618702 573 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 LINC00216-201ENST00000623548 1126 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.29□□□□□ -1.4
USP39Q53GS9 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC6.29□□□□□ -1.4
USP39Q53GS9 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
USP39Q53GS9 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC6.29□□□□□ -1.4
USP39Q53GS9 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
USP39Q53GS9 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
USP39Q53GS9 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
USP39Q53GS9 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC6.28□□□□□ -1.4
USP39Q53GS9 AC008627.1-201ENST00000517511 1704 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
USP39Q53GS9 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC6.28□□□□□ -1.4
USP39Q53GS9 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC6.28□□□□□ -1.4
USP39Q53GS9 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
USP39Q53GS9 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.28□□□□□ -1.4
USP39Q53GS9 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
USP39Q53GS9 RNA5SP273-201ENST00000362484 113 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
USP39Q53GS9 RNA5SP156-201ENST00000410250 110 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 BX664727.1-201ENST00000416024 466 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 QRSL1P2-201ENST00000418582 964 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC6.28□□□□□ -1.4
USP39Q53GS9 AL590399.4-201ENST00000436561 601 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 DNAJC19P5-201ENST00000443295 316 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC6.28□□□□□ -1.4
USP39Q53GS9 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC6.28□□□□□ -1.4
USP39Q53GS9 LRRC37A14P-201ENST00000452297 462 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
USP39Q53GS9 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC6.28□□□□□ -1.4
USP39Q53GS9 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.28□□□□□ -1.4
USP39Q53GS9 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.28□□□□□ -1.4
USP39Q53GS9 NPM1P21-201ENST00000513394 762 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 CR383658.1-201ENST00000514609 734 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 SNORA19.3-201ENST00000516165 130 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 IGKV1D-22-201ENST00000518953 324 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 CBX3P7-201ENST00000532876 502 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 OSBPL9P3-201ENST00000534523 595 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.28□□□□□ -1.4
USP39Q53GS9 LYZ-203ENST00000549690 669 ntTSL 2 BASIC6.28□□□□□ -1.4
USP39Q53GS9 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC6.28□□□□□ -1.4
USP39Q53GS9 AC011270.1-201ENST00000558606 583 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.28□□□□□ -1.4
USP39Q53GS9 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC6.28□□□□□ -1.4
USP39Q53GS9 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
USP39Q53GS9 AL109653.1-201ENST00000603091 248 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.28□□□□□ -1.4
USP39Q53GS9 HULC.1-201ENST00000612720 240 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 AL132640.3-201ENST00000630473 177 ntBASIC6.28□□□□□ -1.4
USP39Q53GS9 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.28□□□□□ -1.4
USP39Q53GS9 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.28□□□□□ -1.4
USP39Q53GS9 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
USP39Q53GS9 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.28□□□□□ -1.4
USP39Q53GS9 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
USP39Q53GS9 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC6.28□□□□□ -1.4
USP39Q53GS9 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP39Q53GS9 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.4
USP39Q53GS9 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC6.27□□□□□ -1.41
USP39Q53GS9 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
USP39Q53GS9 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
USP39Q53GS9 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
USP39Q53GS9 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.27□□□□□ -1.41
USP39Q53GS9 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.27□□□□□ -1.41
USP39Q53GS9 OR52B3P-201ENST00000314715 928 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
USP39Q53GS9 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
USP39Q53GS9 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
USP39Q53GS9 RN7SKP149-201ENST00000363008 344 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 AC096533.1-201ENST00000411645 353 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.27□□□□□ -1.41
USP39Q53GS9 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC6.27□□□□□ -1.41
USP39Q53GS9 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC6.27□□□□□ -1.41
USP39Q53GS9 RPS7P8-201ENST00000418311 581 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC6.27□□□□□ -1.41
USP39Q53GS9 MTND4P24-201ENST00000424002 397 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 AL353706.1-201ENST00000436728 494 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 PPIAP10-201ENST00000438675 458 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms