Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC090079.2-201ENST00000575289 768 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 RN7SL475P-201ENST00000583379 298 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AL356490.1-201ENST00000623079 479 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC080188.3-201ENST00000624842 748 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC012254.3-201ENST00000591183 2117 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AL355488.2-201ENST00000609909 2850 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC068446.1-201ENST00000556425 1549 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC4.96□□□□□ -1.61
PDLIM3Q53GG5 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.61
PDLIM3Q53GG5 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.61
PDLIM3Q53GG5 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 OR3A2-201ENST00000408891 1076 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 PTCD2P2-201ENST00000415579 1095 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 RPL21P50-201ENST00000417698 477 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AL590399.2-201ENST00000427536 309 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 USP24P1-201ENST00000433802 779 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 CXCR2P1-202ENST00000443392 1074 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 RPL36AP39-201ENST00000445859 318 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AL162739.1-201ENST00000450606 307 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 CFL1P4-201ENST00000451536 498 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 UCK2-205ENST00000469256 753 ntTSL 3 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 RPSAP37-201ENST00000470913 821 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 EIF3LP3-201ENST00000495197 822 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 SNX18P24-201ENST00000505249 671 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 FABP5P6-201ENST00000510588 409 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 PRMT5P1-201ENST00000514351 598 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 RNA5SP362-201ENST00000516048 118 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 IGKV3D-25-201ENST00000519599 235 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AC009962.1-201ENST00000567327 3813 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AL355802.4-201ENST00000607635 548 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AL133445.2-201ENST00000611191 527 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 RN7SL787P-201ENST00000613000 284 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AL512506.1-201ENST00000613918 449 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 FAM27E2-201ENST00000619668 403 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 CASC19-246ENST00000641625 1606 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AC117409.1-201ENST00000470499 1310 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AC003973.3-201ENST00000624863 2822 ntBASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
PDLIM3Q53GG5 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms