Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RN7SL346P-201ENST00000491561 294 ntBASIC4□□□□□ -1.77
FOXA3P55318 AC122714.1-201ENST00000502510 459 ntBASIC4□□□□□ -1.77
FOXA3P55318 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4□□□□□ -1.77
FOXA3P55318 AC113423.2-201ENST00000517582 545 ntTSL 2 BASIC4□□□□□ -1.77
FOXA3P55318 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4□□□□□ -1.77
FOXA3P55318 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4□□□□□ -1.77
FOXA3P55318 RPA2P1-201ENST00000556557 721 ntBASIC4□□□□□ -1.77
FOXA3P55318 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC4□□□□□ -1.77
FOXA3P55318 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC4□□□□□ -1.77
FOXA3P55318 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC4□□□□□ -1.77
FOXA3P55318 AC024267.3-201ENST00000579673 562 ntTSL 5 BASIC4□□□□□ -1.77
FOXA3P55318 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4□□□□□ -1.77
FOXA3P55318 WBP1LP12-201ENST00000604449 331 ntBASIC4□□□□□ -1.77
FOXA3P55318 AC025574.2-201ENST00000615621 514 ntBASIC4□□□□□ -1.77
FOXA3P55318 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC4□□□□□ -1.77
FOXA3P55318 OR8G7P-201ENST00000616658 848 ntBASIC4□□□□□ -1.77
FOXA3P55318 AC015914.2-201ENST00000618167 288 ntBASIC4□□□□□ -1.77
FOXA3P55318 AP005431.1-201ENST00000618479 319 ntBASIC4□□□□□ -1.77
FOXA3P55318 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC4□□□□□ -1.77
FOXA3P55318 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
FOXA3P55318 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4□□□□□ -1.77
FOXA3P55318 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
FOXA3P55318 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
FOXA3P55318 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
FOXA3P55318 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4□□□□□ -1.77
FOXA3P55318 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
FOXA3P55318 SPANXN2-201ENST00000598475 1378 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
FOXA3P55318 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4□□□□□ -1.77
FOXA3P55318 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4□□□□□ -1.77
FOXA3P55318 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
FOXA3P55318 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
FOXA3P55318 HSPD1P9-201ENST00000420325 1636 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA3P55318 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA3P55318 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC3.99□□□□□ -1.77
FOXA3P55318 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA3P55318 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA3P55318 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC3.99□□□□□ -1.77
FOXA3P55318 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
FOXA3P55318 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
FOXA3P55318 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA3P55318 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA3P55318 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
FOXA3P55318 SNORA79B-201ENST00000410557 148 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC3.99□□□□□ -1.77
FOXA3P55318 OR13Z1P-201ENST00000416141 834 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC3.99□□□□□ -1.77
FOXA3P55318 AC012519.1-201ENST00000424588 610 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 AC126120.1-201ENST00000431082 470 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 LINC00328-2P-201ENST00000436585 219 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC3.99□□□□□ -1.77
FOXA3P55318 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
FOXA3P55318 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC3.99□□□□□ -1.77
FOXA3P55318 AP000942.1-201ENST00000463969 747 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 AC093827.1-201ENST00000480094 861 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC3.99□□□□□ -1.77
FOXA3P55318 RN7SL814P-201ENST00000487715 300 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA3P55318 AC073073.1-201ENST00000493920 463 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC3.99□□□□□ -1.77
FOXA3P55318 HMGB3P16-201ENST00000508037 287 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC3.99□□□□□ -1.77
FOXA3P55318 SCARNA18.1-201ENST00000516330 83 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 RN7SKP238-201ENST00000516483 249 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 RNA5SP441-201ENST00000516809 88 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 AC105031.1-201ENST00000518550 476 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC3.99□□□□□ -1.77
FOXA3P55318 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC3.99□□□□□ -1.77
FOXA3P55318 WBP1LP3-201ENST00000523033 208 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 AP004607.5-201ENST00000532034 217 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 PCNAP4-201ENST00000532690 730 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC3.99□□□□□ -1.77
FOXA3P55318 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC3.99□□□□□ -1.77
FOXA3P55318 AP005403.1-201ENST00000579720 229 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC3.99□□□□□ -1.77
FOXA3P55318 AC233702.9-201ENST00000581528 203 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 MIR6793-201ENST00000612376 63 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA3P55318 AC012676.3-201ENST00000614983 479 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 AC004801.6-201ENST00000616571 978 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 AC245014.3-201ENST00000618589 347 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 AC015871.5-202ENST00000623252 701 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC3.99□□□□□ -1.77
FOXA3P55318 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA3P55318 AC097461.1-201ENST00000568928 2821 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
FOXA3P55318 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC3.99□□□□□ -1.77
FOXA3P55318 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA3P55318 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA3P55318 AL162456.1-201ENST00000634535 2006 ntBASIC3.99□□□□□ -1.77
FOXA3P55318 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC3.99□□□□□ -1.77
FOXA3P55318 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA3P55318 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA3P55318 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA3P55318 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA3P55318 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA3P55318 MED23-203ENST00000368058 4576 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA3P55318 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA3P55318 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA3P55318 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms