Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.11□□□□□ -1.59
FOXA1P55317 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.11□□□□□ -1.59
FOXA1P55317 AC007998.1-201ENST00000474156 672 ntBASIC5.11□□□□□ -1.59
FOXA1P55317 AC022133.1-201ENST00000490961 571 ntBASIC5.11□□□□□ -1.59
FOXA1P55317 EIF3LP3-201ENST00000495197 822 ntBASIC5.11□□□□□ -1.59
FOXA1P55317 AC090638.1-201ENST00000498296 909 ntBASIC5.11□□□□□ -1.59
FOXA1P55317 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.11□□□□□ -1.59
FOXA1P55317 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.11□□□□□ -1.59
FOXA1P55317 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.11□□□□□ -1.59
FOXA1P55317 AC127024.5-201ENST00000580085 462 ntBASIC5.11□□□□□ -1.59
FOXA1P55317 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.11□□□□□ -1.59
FOXA1P55317 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.11□□□□□ -1.59
FOXA1P55317 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXA1P55317 AC022417.1-201ENST00000624768 1303 ntBASIC5.11□□□□□ -1.59
FOXA1P55317 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
FOXA1P55317 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
FOXA1P55317 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXA1P55317 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
FOXA1P55317 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
FOXA1P55317 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
FOXA1P55317 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXA1P55317 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.1□□□□□ -1.59
FOXA1P55317 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXA1P55317 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.1□□□□□ -1.59
FOXA1P55317 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
FOXA1P55317 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXA1P55317 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
FOXA1P55317 RN7SKP153-201ENST00000365026 316 ntBASIC5.1□□□□□ -1.59
FOXA1P55317 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.1□□□□□ -1.59
FOXA1P55317 RNA5SP284-201ENST00000384547 118 ntBASIC5.1□□□□□ -1.59
FOXA1P55317 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.1□□□□□ -1.59
FOXA1P55317 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
FOXA1P55317 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
FOXA1P55317 MTND6P12-201ENST00000428247 522 ntBASIC5.1□□□□□ -1.59
FOXA1P55317 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
FOXA1P55317 CLUHP1-201ENST00000435012 1190 ntBASIC5.1□□□□□ -1.59
FOXA1P55317 AC012075.1-201ENST00000436549 580 ntBASIC5.1□□□□□ -1.59
FOXA1P55317 CYCSP51-201ENST00000443545 318 ntBASIC5.1□□□□□ -1.59
FOXA1P55317 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.1□□□□□ -1.59
FOXA1P55317 AC084754.1-201ENST00000463466 464 ntBASIC5.1□□□□□ -1.59
FOXA1P55317 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
FOXA1P55317 PFN1P8-201ENST00000497012 543 ntBASIC5.1□□□□□ -1.59
FOXA1P55317 RNA5SP373-201ENST00000517271 95 ntBASIC5.1□□□□□ -1.59
FOXA1P55317 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.1□□□□□ -1.59
FOXA1P55317 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.1□□□□□ -1.59
FOXA1P55317 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.1□□□□□ -1.59
FOXA1P55317 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXA1P55317 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.1□□□□□ -1.59
FOXA1P55317 AC060766.1-201ENST00000590824 627 ntBASIC5.1□□□□□ -1.59
FOXA1P55317 AC125494.2-201ENST00000602431 657 ntBASIC5.1□□□□□ -1.59
FOXA1P55317 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
FOXA1P55317 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXA1P55317 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXA1P55317 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXA1P55317 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
FOXA1P55317 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXA1P55317 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXA1P55317 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
FOXA1P55317 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.1□□□□□ -1.59
FOXA1P55317 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
FOXA1P55317 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
FOXA1P55317 AL022311.1-201ENST00000623726 19416 ntBASIC5.09□□□□□ -1.59
FOXA1P55317 AC006210.2-201ENST00000367074 1545 ntBASIC5.09□□□□□ -1.59
FOXA1P55317 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
FOXA1P55317 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
FOXA1P55317 AC005294.1-201ENST00000355509 281 ntBASIC5.09□□□□□ -1.59
FOXA1P55317 RNU1-146P-201ENST00000364015 165 ntBASIC5.09□□□□□ -1.59
FOXA1P55317 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.09□□□□□ -1.59
FOXA1P55317 U3.23-201ENST00000391132 200 ntBASIC5.09□□□□□ -1.59
FOXA1P55317 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.09□□□□□ -1.59
FOXA1P55317 TCEA1P3-201ENST00000443005 880 ntBASIC5.09□□□□□ -1.59
FOXA1P55317 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.09□□□□□ -1.59
FOXA1P55317 AC073909.1-201ENST00000447112 999 ntBASIC5.09□□□□□ -1.59
FOXA1P55317 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.09□□□□□ -1.59
FOXA1P55317 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.09□□□□□ -1.59
FOXA1P55317 DNAJB5P1-201ENST00000454004 806 ntBASIC5.09□□□□□ -1.59
FOXA1P55317 RPL35AP19-201ENST00000469425 329 ntBASIC5.09□□□□□ -1.59
FOXA1P55317 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.09□□□□□ -1.59
FOXA1P55317 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.09□□□□□ -1.59
FOXA1P55317 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.09□□□□□ -1.59
FOXA1P55317 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.09□□□□□ -1.59
FOXA1P55317 RN7SL708P-201ENST00000580952 299 ntBASIC5.09□□□□□ -1.59
FOXA1P55317 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.09□□□□□ -1.59
FOXA1P55317 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.09□□□□□ -1.59
FOXA1P55317 AC008814.1-201ENST00000603797 406 ntBASIC5.09□□□□□ -1.59
FOXA1P55317 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.09□□□□□ -1.59
FOXA1P55317 AC005252.1-201ENST00000604518 1063 ntBASIC5.09□□□□□ -1.59
FOXA1P55317 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
FOXA1P55317 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.09□□□□□ -1.59
FOXA1P55317 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
FOXA1P55317 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
FOXA1P55317 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
FOXA1P55317 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.09□□□□□ -1.6
FOXA1P55317 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.6
FOXA1P55317 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.09□□□□□ -1.6
FOXA1P55317 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.6
FOXA1P55317 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
FOXA1P55317 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms