Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC7.05□□□□□ -1.28
MSX1P28360 LINC02431-202ENST00000505329 1788 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 AC100871.1-201ENST00000507871 1456 ntBASIC7.05□□□□□ -1.28
MSX1P28360 AC107982.1-201ENST00000507171 1300 ntBASIC7.05□□□□□ -1.28
MSX1P28360 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 DLG2-202ENST00000330014 2789 ntTSL 2 BASIC7.05□□□□□ -1.28
MSX1P28360 DICER1-214ENST00000556045 2776 ntTSL 2 BASIC7.05□□□□□ -1.28
MSX1P28360 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 PYHIN1-202ENST00000368138 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 MACROD2-202ENST00000378058 4025 ntTSL 2 BASIC7.05□□□□□ -1.28
MSX1P28360 AL355974.1-201ENST00000618896 1708 ntBASIC7.05□□□□□ -1.28
MSX1P28360 ZMYND8-221ENST00000619049 4027 ntTSL 5 BASIC7.05□□□□□ -1.28
MSX1P28360 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC7.05□□□□□ -1.28
MSX1P28360 AC007923.2-201ENST00000584218 1591 ntBASIC7.05□□□□□ -1.28
MSX1P28360 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC7.05□□□□□ -1.28
MSX1P28360 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC7.05□□□□□ -1.28
MSX1P28360 BSPH1-201ENST00000344839 654 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 Y_RNA.67-201ENST00000362870 100 ntBASIC7.05□□□□□ -1.28
MSX1P28360 RNA5SP378-201ENST00000363646 120 ntBASIC7.05□□□□□ -1.28
MSX1P28360 Y_RNA.481-201ENST00000384373 102 ntBASIC7.05□□□□□ -1.28
MSX1P28360 RNU6-452P-201ENST00000384406 107 ntBASIC7.05□□□□□ -1.28
MSX1P28360 TRBV6-6-201ENST00000390371 388 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
MSX1P28360 IGHV4-59-201ENST00000390629 495 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
MSX1P28360 VIM2P-201ENST00000402383 1294 ntBASIC7.05□□□□□ -1.28
MSX1P28360 IL6-206ENST00000407492 926 ntTSL 3 BASIC7.05□□□□□ -1.28
MSX1P28360 RNU6-908P-201ENST00000410160 94 ntBASIC7.05□□□□□ -1.28
MSX1P28360 RAB28P1-201ENST00000411517 641 ntBASIC7.05□□□□□ -1.28
MSX1P28360 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC7.05□□□□□ -1.28
MSX1P28360 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC7.05□□□□□ -1.28
MSX1P28360 AC005033.1-201ENST00000428904 813 ntBASIC7.05□□□□□ -1.28
MSX1P28360 AC097468.2-201ENST00000429343 553 ntTSL 4 BASIC7.05□□□□□ -1.28
MSX1P28360 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC7.05□□□□□ -1.28
MSX1P28360 AC000362.1-201ENST00000433725 425 ntBASIC7.05□□□□□ -1.28
MSX1P28360 AC108059.2-201ENST00000434626 151 ntBASIC7.05□□□□□ -1.28
MSX1P28360 AC009961.2-201ENST00000435771 251 ntBASIC7.05□□□□□ -1.28
MSX1P28360 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC7.05□□□□□ -1.28
MSX1P28360 AL512605.1-202ENST00000441919 381 ntBASIC7.05□□□□□ -1.28
MSX1P28360 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC7.05□□□□□ -1.28
MSX1P28360 RPS29P5-201ENST00000452777 171 ntBASIC7.05□□□□□ -1.28
MSX1P28360 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
MSX1P28360 Z82190.1-201ENST00000454534 490 ntBASIC7.05□□□□□ -1.28
MSX1P28360 RN7SL308P-201ENST00000464971 297 ntBASIC7.05□□□□□ -1.28
MSX1P28360 AC021660.1-201ENST00000465006 554 ntBASIC7.05□□□□□ -1.28
MSX1P28360 RN7SL228P-201ENST00000470060 303 ntBASIC7.05□□□□□ -1.28
MSX1P28360 AC018816.1-206ENST00000474544 455 ntTSL 3 BASIC7.05□□□□□ -1.28
MSX1P28360 AC087385.2-201ENST00000477729 498 ntBASIC7.05□□□□□ -1.28
MSX1P28360 AC099521.1-201ENST00000482557 334 ntBASIC7.05□□□□□ -1.28
MSX1P28360 ALG13-214ENST00000482742 620 ntTSL 2 BASIC7.05□□□□□ -1.28
MSX1P28360 AC007182.2-201ENST00000489251 402 ntBASIC7.05□□□□□ -1.28
MSX1P28360 SUMO2P17-201ENST00000504438 285 ntBASIC7.05□□□□□ -1.28
MSX1P28360 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC7.05□□□□□ -1.28
MSX1P28360 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC7.05□□□□□ -1.28
MSX1P28360 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC7.05□□□□□ -1.28
MSX1P28360 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC7.05□□□□□ -1.28
MSX1P28360 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC7.05□□□□□ -1.28
MSX1P28360 AC103855.4-201ENST00000533158 265 ntBASIC7.05□□□□□ -1.28
MSX1P28360 AP003032.2-201ENST00000533697 686 ntTSL 3 BASIC7.05□□□□□ -1.28
MSX1P28360 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC7.05□□□□□ -1.28
MSX1P28360 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC7.05□□□□□ -1.28
MSX1P28360 RN7SL237P-201ENST00000580912 287 ntBASIC7.05□□□□□ -1.28
MSX1P28360 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC7.05□□□□□ -1.28
MSX1P28360 AC018638.8-201ENST00000588755 281 ntBASIC7.05□□□□□ -1.28
MSX1P28360 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 AL021918.1-201ENST00000603933 236 ntBASIC7.05□□□□□ -1.28
MSX1P28360 HNRNPA1P67-201ENST00000604027 926 ntBASIC7.05□□□□□ -1.28
MSX1P28360 AC112187.2-201ENST00000604345 283 ntBASIC7.05□□□□□ -1.28
MSX1P28360 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 AC139792.3-201ENST00000623525 224 ntBASIC7.05□□□□□ -1.28
MSX1P28360 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC7.05□□□□□ -1.28
MSX1P28360 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC7.05□□□□□ -1.28
MSX1P28360 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC7.05□□□□□ -1.28
MSX1P28360 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 LINC02209-201ENST00000521245 2651 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 CHURC1-208ENST00000607599 3615 ntTSL 2 BASIC7.05□□□□□ -1.28
MSX1P28360 LINC01206-202ENST00000474045 2240 ntTSL 5 BASIC7.05□□□□□ -1.28
MSX1P28360 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 PPP6R3-206ENST00000524904 4292 ntAPPRIS ALT1 TSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 IL1RL1-203ENST00000404917 3571 ntTSL 2 BASIC7.05□□□□□ -1.28
MSX1P28360 AL136981.1-203ENST00000451452 3844 ntBASIC7.05□□□□□ -1.28
MSX1P28360 PRDX6-201ENST00000340385 1751 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 CHAF1B-201ENST00000314103 4480 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 RNF219-201ENST00000282003 3529 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
MSX1P28360 TTC41P-204ENST00000548897 2998 ntTSL 5 BASIC7.05□□□□□ -1.28
MSX1P28360 CDR1-202ENST00000625883 1485 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
MSX1P28360 AL359091.1-201ENST00000449048 1734 ntBASIC7.04□□□□□ -1.28
MSX1P28360 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 PAH-201ENST00000307000 2466 ntTSL 5 BASIC7.04□□□□□ -1.28
MSX1P28360 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
MSX1P28360 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 HDAC9-218ENST00000456174 2307 ntTSL 2 BASIC7.04□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms