Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC109309.2-201ENST00000612597 332 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AL356863.1-201ENST00000623378 1080 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC009039.2-201ENST00000624524 529 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 PARP4P2-201ENST00000446672 3326 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC019072.1-201ENST00000604535 1551 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 RBPJP7-201ENST00000442803 1447 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 RBPJP5-201ENST00000449433 1447 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 RNA5SP375-201ENST00000362975 119 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 RNU6-792P-201ENST00000363490 107 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AL096711.1-201ENST00000404780 554 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 RN7SKP229-201ENST00000410465 302 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 GTF2IP5-201ENST00000414608 731 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 MORF4L1P7-201ENST00000426038 703 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 CST12P-201ENST00000457644 362 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 CYP4F27P-201ENST00000514557 494 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 SCARNA18.1-201ENST00000516330 83 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 RNU6-334P-201ENST00000517072 102 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AC005000.1-201ENST00000536192 288 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AC051619.2-201ENST00000559063 397 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AP001496.3-201ENST00000580230 913 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AC005244.1-201ENST00000582566 339 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AC119403.2-201ENST00000590960 598 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AL133247.2-201ENST00000603236 482 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AL445435.1-201ENST00000604232 665 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AC096708.4-201ENST00000620563 552 ntBASIC6.1□□□□□ -1.43
DKK3Q9UBP4 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
DKK3Q9UBP4 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 DNM1P47-203ENST00000571780 12667 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC006511.3-201ENST00000624929 1783 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 EEF1A1P21-201ENST00000512363 1344 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 RNFT1P3-201ENST00000340898 1052 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 SUGT1P2-201ENST00000379452 992 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 RN7SKP151-201ENST00000410230 316 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC116036.1-201ENST00000412199 367 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AL024507.1-201ENST00000412741 274 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 PTCD2P2-201ENST00000415579 1095 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 BX679664.2-201ENST00000439282 283 ntBASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 437.5 ms