Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC8.1□□□□□ -1.11
SCAPERQ9BY12 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
SCAPERQ9BY12 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC8.1□□□□□ -1.11
SCAPERQ9BY12 AC018809.2-201ENST00000602436 3823 ntBASIC8.09□□□□□ -1.11
SCAPERQ9BY12 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 AL121886.1-201ENST00000358609 435 ntBASIC8.09□□□□□ -1.11
SCAPERQ9BY12 SNORD1C-201ENST00000363315 78 ntBASIC8.09□□□□□ -1.11
SCAPERQ9BY12 DBIP1-201ENST00000401435 260 ntBASIC8.09□□□□□ -1.11
SCAPERQ9BY12 NUDT19P3-201ENST00000404698 555 ntBASIC8.09□□□□□ -1.11
SCAPERQ9BY12 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 TPT1P12-201ENST00000448968 492 ntBASIC8.09□□□□□ -1.11
SCAPERQ9BY12 RSU1P1-201ENST00000453416 441 ntBASIC8.09□□□□□ -1.11
SCAPERQ9BY12 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 RN7SKP248-201ENST00000516278 305 ntBASIC8.09□□□□□ -1.11
SCAPERQ9BY12 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 AC104687.2-201ENST00000604442 342 ntBASIC8.09□□□□□ -1.11
SCAPERQ9BY12 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
SCAPERQ9BY12 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC8.09□□□□□ -1.12
SCAPERQ9BY12 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC8.09□□□□□ -1.12
SCAPERQ9BY12 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 AC006600.2-201ENST00000624834 2506 ntBASIC8.08□□□□□ -1.12
SCAPERQ9BY12 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 RNU1-59P-201ENST00000364829 162 ntBASIC8.08□□□□□ -1.12
SCAPERQ9BY12 RNA5SP455-201ENST00000365190 119 ntBASIC8.08□□□□□ -1.12
SCAPERQ9BY12 GAPDHP15-201ENST00000398586 975 ntBASIC8.08□□□□□ -1.12
SCAPERQ9BY12 USP24P1-201ENST00000433802 779 ntBASIC8.08□□□□□ -1.12
SCAPERQ9BY12 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 NDUFA5P8-201ENST00000449019 346 ntBASIC8.08□□□□□ -1.12
SCAPERQ9BY12 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 AC109464.1-201ENST00000511091 819 ntBASIC8.08□□□□□ -1.12
SCAPERQ9BY12 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 OR5AM1P-201ENST00000532136 1032 ntBASIC8.08□□□□□ -1.12
SCAPERQ9BY12 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 U1.25-201ENST00000614085 162 ntBASIC8.08□□□□□ -1.12
SCAPERQ9BY12 U1.34-201ENST00000618578 162 ntBASIC8.08□□□□□ -1.12
SCAPERQ9BY12 U1.31-201ENST00000620022 160 ntBASIC8.08□□□□□ -1.12
SCAPERQ9BY12 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
SCAPERQ9BY12 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 AC092747.4-201ENST00000620519 1861 ntBASIC8.07□□□□□ -1.12
SCAPERQ9BY12 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 AL117339.4-201ENST00000608335 7063 ntBASIC8.07□□□□□ -1.12
SCAPERQ9BY12 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 AC079741.1-201ENST00000321498 212 ntBASIC8.07□□□□□ -1.12
SCAPERQ9BY12 CHEK2P3-201ENST00000416118 248 ntBASIC8.07□□□□□ -1.12
SCAPERQ9BY12 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 AC073264.2-201ENST00000448886 166 ntBASIC8.07□□□□□ -1.12
SCAPERQ9BY12 NDUFA12P1-201ENST00000455914 406 ntBASIC8.07□□□□□ -1.12
SCAPERQ9BY12 RPL5P12-201ENST00000477071 851 ntBASIC8.07□□□□□ -1.12
SCAPERQ9BY12 STRADBP1-201ENST00000478954 1281 ntBASIC8.07□□□□□ -1.12
SCAPERQ9BY12 AC058823.1-201ENST00000485315 474 ntBASIC8.07□□□□□ -1.12
SCAPERQ9BY12 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 AL133481.2-203ENST00000607558 139 ntBASIC8.07□□□□□ -1.12
SCAPERQ9BY12 AL356752.1-201ENST00000615844 593 ntBASIC8.07□□□□□ -1.12
SCAPERQ9BY12 ALB-219ENST00000621085 1418 ntTSL 5 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 NXF4-202ENST00000416098 1465 ntBASIC8.07□□□□□ -1.12
SCAPERQ9BY12 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC8.07□□□□□ -1.12
SCAPERQ9BY12 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC8.06□□□□□ -1.12
SCAPERQ9BY12 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC8.06□□□□□ -1.12
SCAPERQ9BY12 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC8.06□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms