Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC104297.1-201ENST00000393779 870 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AL356057.1-202ENST00000402263 756 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 SNORA11-201ENST00000408789 128 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 RN7SKP293-201ENST00000411389 296 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 OR51A6P-201ENST00000418680 1004 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AC092651.1-201ENST00000426110 312 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AC073410.1-201ENST00000435125 589 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 RPL23AP60-201ENST00000450011 454 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 RAB28P2-201ENST00000454299 641 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 HSPE1P22-201ENST00000456856 327 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 PFN1P6-201ENST00000476786 399 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 RN7SL326P-201ENST00000477493 296 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 OR5M14P-201ENST00000506803 618 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 RNA5SP34-201ENST00000516887 130 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AC112191.2-201ENST00000522428 333 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AC021269.1-201ENST00000526860 705 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 NPM1P42-201ENST00000560329 862 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 LINC00557-201ENST00000563184 1279 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 ADAD1P2-201ENST00000588476 646 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AL360012.1-201ENST00000602813 131 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AC012213.4-201ENST00000606457 354 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AL135786.2-201ENST00000608422 615 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AC037198.3-201ENST00000616754 526 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 CASC19-222ENST00000641321 1173 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AC010266.2-201ENST00000564741 3255 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 CNOT6LP1-201ENST00000559681 1462 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 OR10AB1P-202ENST00000641219 1686 ntBASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
PDLIM3Q53GG5 AL355834.1-201ENST00000556602 3965 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC024341.1-201ENST00000526444 1552 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 RN7SKP103-201ENST00000363848 320 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 SNORA51.9-201ENST00000384295 124 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 CCNB2P1-201ENST00000399411 1150 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 RNU4-34P-201ENST00000410431 124 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 RPL37P18-201ENST00000411602 243 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC013470.3-201ENST00000420252 1194 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 OSTCP4-201ENST00000424397 449 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC112492.2-201ENST00000432774 1030 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 ATP6V1E1P1-201ENST00000439215 681 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 ATP5LP2-201ENST00000440646 311 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 BUD31P2-201ENST00000449374 300 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC104629.2-201ENST00000468627 598 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC098847.1-201ENST00000473094 348 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 KHDC1P1-201ENST00000511053 508 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC067904.2-201ENST00000517322 1283 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 AC018442.3-201ENST00000523025 183 ntBASIC4.97□□□□□ -1.61
PDLIM3Q53GG5 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms