Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
BDNFP23560 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
BDNFP23560 MIR375-201ENST00000362103 64 ntBASIC6.2□□□□□ -1.42
BDNFP23560 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC6.2□□□□□ -1.42
BDNFP23560 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
BDNFP23560 RPL6P29-201ENST00000414863 865 ntBASIC6.2□□□□□ -1.42
BDNFP23560 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.2□□□□□ -1.42
BDNFP23560 BX119321.1-201ENST00000428912 797 ntBASIC6.2□□□□□ -1.42
BDNFP23560 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC6.2□□□□□ -1.42
BDNFP23560 DEFA9P-201ENST00000433042 285 ntBASIC6.2□□□□□ -1.42
BDNFP23560 H3F3BP1-201ENST00000440551 403 ntBASIC6.2□□□□□ -1.42
BDNFP23560 AC023141.8-201ENST00000442554 208 ntBASIC6.2□□□□□ -1.42
BDNFP23560 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC6.2□□□□□ -1.42
BDNFP23560 NDUFA5P8-201ENST00000449019 346 ntBASIC6.2□□□□□ -1.42
BDNFP23560 AL445687.2-201ENST00000458156 728 ntBASIC6.2□□□□□ -1.42
BDNFP23560 AL157777.1-201ENST00000468100 304 ntBASIC6.2□□□□□ -1.42
BDNFP23560 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC6.2□□□□□ -1.42
BDNFP23560 RPL38P3-201ENST00000484463 213 ntBASIC6.2□□□□□ -1.42
BDNFP23560 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
BDNFP23560 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC6.2□□□□□ -1.42
BDNFP23560 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
BDNFP23560 AC093770.1-201ENST00000511559 571 ntBASIC6.2□□□□□ -1.42
BDNFP23560 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC6.2□□□□□ -1.42
BDNFP23560 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
BDNFP23560 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC6.2□□□□□ -1.42
BDNFP23560 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC6.2□□□□□ -1.42
BDNFP23560 AL445670.1-201ENST00000618889 801 ntBASIC6.2□□□□□ -1.42
BDNFP23560 ATM-229ENST00000639953 587 ntTSL 5 BASIC6.2□□□□□ -1.42
BDNFP23560 AL139254.3-201ENST00000641097 674 ntBASIC6.2□□□□□ -1.42
BDNFP23560 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
BDNFP23560 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
BDNFP23560 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC6.2□□□□□ -1.42
BDNFP23560 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
BDNFP23560 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
BDNFP23560 CASC19-248ENST00000641674 1356 ntBASIC6.19□□□□□ -1.42
BDNFP23560 AC068769.1-201ENST00000474767 2426 ntBASIC6.19□□□□□ -1.42
BDNFP23560 AC109446.4-201ENST00000623235 2755 ntBASIC6.19□□□□□ -1.42
BDNFP23560 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
BDNFP23560 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
BDNFP23560 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
BDNFP23560 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
BDNFP23560 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC6.19□□□□□ -1.42
BDNFP23560 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC6.19□□□□□ -1.42
BDNFP23560 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
BDNFP23560 SNORA27.3-201ENST00000364937 134 ntBASIC6.19□□□□□ -1.42
BDNFP23560 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
BDNFP23560 SNORA17A-201ENST00000391185 133 ntBASIC6.19□□□□□ -1.42
BDNFP23560 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
BDNFP23560 AL451046.1-201ENST00000406097 534 ntBASIC6.19□□□□□ -1.42
BDNFP23560 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC6.19□□□□□ -1.42
BDNFP23560 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC6.19□□□□□ -1.42
BDNFP23560 RPL23AP18-201ENST00000416139 468 ntBASIC6.19□□□□□ -1.42
BDNFP23560 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC6.19□□□□□ -1.42
BDNFP23560 DNAJC19P5-201ENST00000443295 316 ntBASIC6.19□□□□□ -1.42
BDNFP23560 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC6.19□□□□□ -1.42
BDNFP23560 AL161636.2-201ENST00000445179 927 ntBASIC6.19□□□□□ -1.42
BDNFP23560 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC6.19□□□□□ -1.42
BDNFP23560 PSMC1P13-201ENST00000458195 985 ntBASIC6.19□□□□□ -1.42
BDNFP23560 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC6.19□□□□□ -1.42
BDNFP23560 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
BDNFP23560 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
BDNFP23560 MIR2117-201ENST00000516780 80 ntBASIC6.19□□□□□ -1.42
BDNFP23560 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC6.19□□□□□ -1.42
BDNFP23560 AC008429.4-201ENST00000521201 182 ntBASIC6.19□□□□□ -1.42
BDNFP23560 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC6.19□□□□□ -1.42
BDNFP23560 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
BDNFP23560 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC6.19□□□□□ -1.42
BDNFP23560 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC6.19□□□□□ -1.42
BDNFP23560 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC6.19□□□□□ -1.42
BDNFP23560 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC6.19□□□□□ -1.42
BDNFP23560 AC015802.2-201ENST00000589690 189 ntBASIC6.19□□□□□ -1.42
BDNFP23560 AP003497.2-201ENST00000624220 967 ntBASIC6.19□□□□□ -1.42
BDNFP23560 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC6.19□□□□□ -1.42
BDNFP23560 SNORA17.5-201ENST00000630429 132 ntBASIC6.19□□□□□ -1.42
BDNFP23560 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
BDNFP23560 AC130304.1-201ENST00000622942 2385 ntBASIC6.19□□□□□ -1.42
BDNFP23560 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
BDNFP23560 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.19□□□□□ -1.42
BDNFP23560 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
BDNFP23560 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
BDNFP23560 AC093671.1-201ENST00000624981 2929 ntBASIC6.19□□□□□ -1.42
BDNFP23560 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
BDNFP23560 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC6.19□□□□□ -1.42
BDNFP23560 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
BDNFP23560 AC090017.1-201ENST00000548612 1779 ntBASIC6.18□□□□□ -1.42
BDNFP23560 AL450326.2-201ENST00000421913 1962 ntBASIC6.18□□□□□ -1.42
BDNFP23560 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC6.18□□□□□ -1.42
BDNFP23560 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.18□□□□□ -1.42
BDNFP23560 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.18□□□□□ -1.42
BDNFP23560 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.18□□□□□ -1.42
BDNFP23560 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
BDNFP23560 RN7SKP69-201ENST00000365390 305 ntBASIC6.18□□□□□ -1.42
BDNFP23560 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
BDNFP23560 RNU6-31P-201ENST00000384388 108 ntBASIC6.18□□□□□ -1.42
BDNFP23560 MIR320B1-201ENST00000390209 79 ntBASIC6.18□□□□□ -1.42
BDNFP23560 AL136116.2-201ENST00000404020 785 ntBASIC6.18□□□□□ -1.42
BDNFP23560 LSM5-205ENST00000409952 687 ntTSL 4 BASIC6.18□□□□□ -1.42
BDNFP23560 LSM5-206ENST00000409987 504 ntTSL 5 BASIC6.18□□□□□ -1.42
BDNFP23560 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
BDNFP23560 MTCO3P21-201ENST00000430791 643 ntBASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms