Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 NPM1P17-201ENST00000479221 602 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AC114728.1-201ENST00000488289 483 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 RN7SKP238-201ENST00000516483 249 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 RNA5SP340-201ENST00000517132 107 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AC027308.1-201ENST00000517993 110 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 NPM1P52-201ENST00000518264 846 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 TRIM77BP-201ENST00000524985 1119 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 C1DP5-201ENST00000525775 383 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 OR4A40P-201ENST00000533878 948 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AC093849.1-201ENST00000563631 2209 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 RNU4ATAC-201ENST00000580972 127 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AC008507.2-201ENST00000588402 1176 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AL138895.2-201ENST00000603019 178 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AC027334.1-201ENST00000603257 310 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AC006363.1-201ENST00000603806 463 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AC095038.2-201ENST00000621464 1070 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AC129778.1-202ENST00000623812 261 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AL357562.1-201ENST00000624911 609 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AL591379.1-207ENST00000635982 261 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 AMYH02020865.1-205ENST00000636189 261 ntBASIC6.12□□□□□ -1.43
DKK3Q9UBP4 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
DKK3Q9UBP4 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 GNL2P1-201ENST00000451274 2190 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 LCN1P2-201ENST00000372030 223 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC007562.1-201ENST00000421819 517 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AL034379.1-201ENST00000423216 253 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 ARAFP2-201ENST00000440565 559 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC023274.2-201ENST00000445264 521 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC016027.4-201ENST00000450866 277 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 RPL7L1P3-201ENST00000455249 689 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 DUXAP8-207ENST00000456786 622 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC106872.4-201ENST00000510050 523 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 RFPL4AP3-201ENST00000515267 345 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 RN7SKP253-201ENST00000516424 309 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 RNU6-889P-201ENST00000517189 103 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC103833.1-201ENST00000517442 172 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 OR56A7P-201ENST00000524865 941 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC139103.1-201ENST00000534696 1030 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 ASB8-203ENST00000535988 679 ntTSL 2 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC010547.7-201ENST00000570323 333 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 MIMT1-201ENST00000597105 1050 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC011445.2-201ENST00000599274 173 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC067773.1-201ENST00000603284 1094 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC6.11□□□□□ -1.43
DKK3Q9UBP4 AC108673.3-201ENST00000609183 335 ntBASIC6.11□□□□□ -1.43
DKK3Q9UBP4 DUXAP10-204ENST00000612052 616 ntBASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms