Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 OR4A17P-201ENST00000526032 904 ntBASIC5.72□□□□□ -1.49
COL4A4P53420 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.72□□□□□ -1.49
COL4A4P53420 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A4P53420 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A4P53420 AL023583.1-201ENST00000607518 1143 ntBASIC5.72□□□□□ -1.49
COL4A4P53420 AC015660.5-201ENST00000623238 564 ntBASIC5.72□□□□□ -1.49
COL4A4P53420 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A4P53420 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A4P53420 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A4P53420 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A4P53420 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC5.72□□□□□ -1.49
COL4A4P53420 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
COL4A4P53420 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A4P53420 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC5.72□□□□□ -1.49
COL4A4P53420 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A4P53420 AC107980.1-201ENST00000558671 3355 ntBASIC5.72□□□□□ -1.49
COL4A4P53420 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
COL4A4P53420 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC5.72□□□□□ -1.49
COL4A4P53420 RNU6-398P-201ENST00000384143 109 ntBASIC5.72□□□□□ -1.49
COL4A4P53420 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A4P53420 COX6CP17-201ENST00000421389 185 ntBASIC5.72□□□□□ -1.49
COL4A4P53420 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.72□□□□□ -1.49
COL4A4P53420 RPL34P20-201ENST00000442771 351 ntBASIC5.72□□□□□ -1.49
COL4A4P53420 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A4P53420 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.72□□□□□ -1.49
COL4A4P53420 Z92846.1-201ENST00000456203 268 ntBASIC5.72□□□□□ -1.49
COL4A4P53420 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A4P53420 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
COL4A4P53420 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.72□□□□□ -1.49
COL4A4P53420 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.72□□□□□ -1.49
COL4A4P53420 RN7SL356P-201ENST00000582228 248 ntBASIC5.72□□□□□ -1.49
COL4A4P53420 AC011447.4-201ENST00000587562 111 ntBASIC5.72□□□□□ -1.49
COL4A4P53420 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.72□□□□□ -1.49
COL4A4P53420 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
COL4A4P53420 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A4P53420 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
COL4A4P53420 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC5.72□□□□□ -1.49
COL4A4P53420 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A4P53420 AC013268.3-201ENST00000262716 2324 ntBASIC5.71□□□□□ -1.49
COL4A4P53420 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.71□□□□□ -1.49
COL4A4P53420 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.49
COL4A4P53420 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL4A4P53420 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.71□□□□□ -1.5
COL4A4P53420 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL4A4P53420 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL4A4P53420 AC092747.4-201ENST00000620519 1861 ntBASIC5.71□□□□□ -1.5
COL4A4P53420 FAM3C2-201ENST00000312214 681 ntBASIC5.71□□□□□ -1.5
COL4A4P53420 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL4A4P53420 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL4A4P53420 NUTF2P7-201ENST00000453086 375 ntBASIC5.71□□□□□ -1.5
COL4A4P53420 TAAR4P-201ENST00000454843 1039 ntBASIC5.71□□□□□ -1.5
COL4A4P53420 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.71□□□□□ -1.5
COL4A4P53420 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.71□□□□□ -1.5
COL4A4P53420 AC130364.2-201ENST00000528639 604 ntBASIC5.71□□□□□ -1.5
COL4A4P53420 OR4A43P-201ENST00000532938 908 ntBASIC5.71□□□□□ -1.5
COL4A4P53420 AC134349.2-201ENST00000535136 910 ntBASIC5.71□□□□□ -1.5
COL4A4P53420 H3F3BP2-201ENST00000583907 357 ntBASIC5.71□□□□□ -1.5
COL4A4P53420 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.71□□□□□ -1.5
COL4A4P53420 MIR6133-201ENST00000617057 108 ntBASIC5.71□□□□□ -1.5
COL4A4P53420 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL4A4P53420 NLRP3P1-201ENST00000622303 1785 ntBASIC5.71□□□□□ -1.5
COL4A4P53420 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL4A4P53420 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL4A4P53420 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL4A4P53420 AL353796.1-201ENST00000561542 3241 ntBASIC5.71□□□□□ -1.5
COL4A4P53420 AC068870.1-201ENST00000563737 2455 ntBASIC5.71□□□□□ -1.5
COL4A4P53420 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL4A4P53420 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
COL4A4P53420 AL008638.3-201ENST00000623027 5182 ntBASIC5.7□□□□□ -1.5
COL4A4P53420 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.7□□□□□ -1.5
COL4A4P53420 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL4A4P53420 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
COL4A4P53420 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL4A4P53420 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL4A4P53420 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
COL4A4P53420 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL4A4P53420 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.7□□□□□ -1.5
COL4A4P53420 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL4A4P53420 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
COL4A4P53420 RPS4XP9-201ENST00000405151 780 ntBASIC5.7□□□□□ -1.5
COL4A4P53420 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL4A4P53420 AC069213.2-201ENST00000420238 366 ntBASIC5.7□□□□□ -1.5
COL4A4P53420 MGAT2P2-201ENST00000427194 797 ntBASIC5.7□□□□□ -1.5
COL4A4P53420 IGBP1P3-201ENST00000447449 1000 ntBASIC5.7□□□□□ -1.5
COL4A4P53420 RPL31P44-201ENST00000447680 377 ntBASIC5.7□□□□□ -1.5
COL4A4P53420 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.7□□□□□ -1.5
COL4A4P53420 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.7□□□□□ -1.5
COL4A4P53420 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL4A4P53420 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.7□□□□□ -1.5
COL4A4P53420 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC5.7□□□□□ -1.5
COL4A4P53420 RNA5SP373-201ENST00000517271 95 ntBASIC5.7□□□□□ -1.5
COL4A4P53420 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.7□□□□□ -1.5
COL4A4P53420 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.7□□□□□ -1.5
COL4A4P53420 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC5.7□□□□□ -1.5
COL4A4P53420 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL4A4P53420 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL4A4P53420 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL4A4P53420 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
COL4A4P53420 AC074101.1-201ENST00000637861 241 ntBASIC5.7□□□□□ -1.5
COL4A4P53420 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms