Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXA9P31269 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
HOXA9P31269 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXA9P31269 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.76□□□□□ -1.49
HOXA9P31269 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA9P31269 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA9P31269 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXA9P31269 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA9P31269 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXA9P31269 MIR550A3-201ENST00000390735 95 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 RNA5SP487-201ENST00000410186 122 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXA9P31269 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.76□□□□□ -1.49
HOXA9P31269 AL590399.2-201ENST00000427536 309 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 RPL12P17-201ENST00000432393 498 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 AL035090.1-201ENST00000454835 332 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA9P31269 RN7SL97P-201ENST00000486780 299 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 AC109462.1-201ENST00000491087 368 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXA9P31269 AC026782.2-201ENST00000510845 636 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXA9P31269 MTND6P2-201ENST00000512226 524 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 SCARNA16.4-201ENST00000516956 187 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
HOXA9P31269 AC069307.1-201ENST00000602820 447 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXA9P31269 AL136295.6-201ENST00000610486 658 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 AC109583.2-201ENST00000617367 129 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 AP002505.2-201ENST00000623585 696 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXA9P31269 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXA9P31269 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXA9P31269 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
HOXA9P31269 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
HOXA9P31269 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA9P31269 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXA9P31269 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA9P31269 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA9P31269 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.76□□□□□ -1.49
HOXA9P31269 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXA9P31269 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
HOXA9P31269 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXA9P31269 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXA9P31269 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXA9P31269 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
HOXA9P31269 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
HOXA9P31269 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXA9P31269 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.75□□□□□ -1.49
HOXA9P31269 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.75□□□□□ -1.49
HOXA9P31269 AC011493.1-201ENST00000596753 1632 ntBASIC5.75□□□□□ -1.49
HOXA9P31269 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXA9P31269 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
HOXA9P31269 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXA9P31269 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXA9P31269 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
HOXA9P31269 RNU1-136P-201ENST00000384181 164 ntBASIC5.75□□□□□ -1.49
HOXA9P31269 AC090058.1-201ENST00000498788 435 ntBASIC5.75□□□□□ -1.49
HOXA9P31269 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXA9P31269 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXA9P31269 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.75□□□□□ -1.49
HOXA9P31269 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.75□□□□□ -1.49
HOXA9P31269 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.75□□□□□ -1.49
HOXA9P31269 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXA9P31269 MIR4646-201ENST00000580775 63 ntBASIC5.75□□□□□ -1.49
HOXA9P31269 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXA9P31269 AC006116.3-201ENST00000592968 361 ntBASIC5.75□□□□□ -1.49
HOXA9P31269 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXA9P31269 HSPA8P18-201ENST00000439846 1928 ntBASIC5.75□□□□□ -1.49
HOXA9P31269 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXA9P31269 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
HOXA9P31269 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXA9P31269 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.75□□□□□ -1.49
HOXA9P31269 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXA9P31269 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXA9P31269 KYNUP3-201ENST00000574386 1341 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA9P31269 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA9P31269 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA9P31269 AL359955.1-201ENST00000455242 3275 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA9P31269 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA9P31269 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXA9P31269 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA9P31269 RNA5SP443-201ENST00000363083 132 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 RNU1-106P-201ENST00000384382 164 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
HOXA9P31269 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 AL589647.1-201ENST00000402485 466 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 AL133388.1-201ENST00000404509 287 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 U3.36-201ENST00000408418 213 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXA9P31269 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXA9P31269 GAPDHP25-201ENST00000447061 1001 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXA9P31269 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXA9P31269 PDCL3P4-201ENST00000489621 720 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXA9P31269 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA9P31269 RNU6-941P-201ENST00000516346 108 ntBASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms