Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC6.59□□□□□ -1.35
COL5A3P25940 AC008033.2-201ENST00000542626 177 ntBASIC6.59□□□□□ -1.35
COL5A3P25940 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A3P25940 AC010435.1-201ENST00000623353 1177 ntBASIC6.59□□□□□ -1.35
COL5A3P25940 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC6.59□□□□□ -1.35
COL5A3P25940 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A3P25940 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC6.59□□□□□ -1.35
COL5A3P25940 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC6.59□□□□□ -1.35
COL5A3P25940 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A3P25940 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
COL5A3P25940 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
COL5A3P25940 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC6.59□□□□□ -1.35
COL5A3P25940 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC6.59□□□□□ -1.36
COL5A3P25940 OR4K13-203ENST00000641904 5684 ntAPPRIS P1 BASIC6.59□□□□□ -1.36
COL5A3P25940 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
COL5A3P25940 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC6.59□□□□□ -1.36
COL5A3P25940 HMGN2P25-201ENST00000486956 268 ntBASIC6.59□□□□□ -1.36
COL5A3P25940 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.59□□□□□ -1.36
COL5A3P25940 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
COL5A3P25940 AL161616.1-201ENST00000611867 286 ntBASIC6.59□□□□□ -1.36
COL5A3P25940 CR381572.2-201ENST00000624852 397 ntBASIC6.59□□□□□ -1.36
COL5A3P25940 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC6.59□□□□□ -1.36
COL5A3P25940 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A3P25940 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6.58□□□□□ -1.36
COL5A3P25940 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A3P25940 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A3P25940 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A3P25940 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC6.58□□□□□ -1.36
COL5A3P25940 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
COL5A3P25940 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A3P25940 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A3P25940 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A3P25940 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC6.58□□□□□ -1.36
COL5A3P25940 RN7SKP260-201ENST00000516907 149 ntBASIC6.58□□□□□ -1.36
COL5A3P25940 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC6.58□□□□□ -1.36
COL5A3P25940 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC6.58□□□□□ -1.36
COL5A3P25940 AC011487.3-201ENST00000593607 453 ntBASIC6.58□□□□□ -1.36
COL5A3P25940 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC6.58□□□□□ -1.36
COL5A3P25940 AC015712.7-201ENST00000615211 635 ntBASIC6.58□□□□□ -1.36
COL5A3P25940 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
COL5A3P25940 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A3P25940 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.58□□□□□ -1.36
COL5A3P25940 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC6.58□□□□□ -1.36
COL5A3P25940 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
COL5A3P25940 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A3P25940 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC6.57□□□□□ -1.36
COL5A3P25940 AP003175.1-201ENST00000641383 6658 ntBASIC6.57□□□□□ -1.36
COL5A3P25940 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL5A3P25940 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL5A3P25940 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC6.57□□□□□ -1.36
COL5A3P25940 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL5A3P25940 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL5A3P25940 FAM3C2-201ENST00000312214 681 ntBASIC6.57□□□□□ -1.36
COL5A3P25940 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
COL5A3P25940 DNAJA1P3-201ENST00000399417 1194 ntBASIC6.57□□□□□ -1.36
COL5A3P25940 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC6.57□□□□□ -1.36
COL5A3P25940 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC6.57□□□□□ -1.36
COL5A3P25940 NDUFA5P9-201ENST00000472609 340 ntBASIC6.57□□□□□ -1.36
COL5A3P25940 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC6.57□□□□□ -1.36
COL5A3P25940 RGS5-219ENST00000528019 512 ntTSL 4 BASIC6.57□□□□□ -1.36
COL5A3P25940 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC6.57□□□□□ -1.36
COL5A3P25940 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
COL5A3P25940 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL5A3P25940 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL5A3P25940 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.57□□□□□ -1.36
COL5A3P25940 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC6.57□□□□□ -1.36
COL5A3P25940 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL5A3P25940 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL5A3P25940 AC003973.3-201ENST00000624863 2822 ntBASIC6.57□□□□□ -1.36
COL5A3P25940 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC6.57□□□□□ -1.36
COL5A3P25940 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.57□□□□□ -1.36
COL5A3P25940 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC6.57□□□□□ -1.36
COL5A3P25940 AL132640.2-201ENST00000559968 1698 ntBASIC6.57□□□□□ -1.36
COL5A3P25940 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL5A3P25940 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL5A3P25940 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
COL5A3P25940 GTF2IP5-201ENST00000414608 731 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 AC119751.6-201ENST00000416712 186 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 C4BPAP2-201ENST00000428434 478 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 AC007559.1-201ENST00000428736 355 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 AL161722.2-201ENST00000434731 981 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 RPS29P10-201ENST00000439197 166 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC6.56□□□□□ -1.36
COL5A3P25940 AC073465.2-201ENST00000440938 498 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC6.56□□□□□ -1.36
COL5A3P25940 STRADBP1-201ENST00000478954 1281 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 RPL7P41-201ENST00000485823 957 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC6.56□□□□□ -1.36
COL5A3P25940 IGKV1-32-201ENST00000519290 311 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC6.56□□□□□ -1.36
COL5A3P25940 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC6.56□□□□□ -1.36
COL5A3P25940 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL5A3P25940 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC6.56□□□□□ -1.36
COL5A3P25940 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC6.56□□□□□ -1.36
COL5A3P25940 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC6.56□□□□□ -1.36
COL5A3P25940 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL5A3P25940 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
COL5A3P25940 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC6.56□□□□□ -1.36
COL5A3P25940 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL5A3P25940 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms