Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CELSR3-AS1-201ENST00000421275 196 ntTSL 2 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 FTH1P16-201ENST00000435241 552 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AL359672.1-201ENST00000442302 409 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AL035417.1-201ENST00000442754 214 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AL080317.1-201ENST00000444259 557 ntTSL 2 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 Y_RNA.653-201ENST00000459091 95 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 ACTG1P20-201ENST00000486001 468 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 LINC02021-203ENST00000514145 569 ntTSL 4 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AC104031.1-201ENST00000527726 372 ntTSL 2 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AC009729.1-201ENST00000548873 1133 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 SRSF5-206ENST00000554021 567 ntTSL 4 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 NMNAT1P1-201ENST00000554095 876 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AC104046.1-201ENST00000559487 406 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AC010547.7-201ENST00000570323 333 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 MIR544B-201ENST00000582372 78 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 ACP5-208ENST00000590420 301 ntTSL 5 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AC104695.2-201ENST00000605056 775 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 OR1X1P-201ENST00000606159 931 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AC096772.1-201ENST00000609146 564 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AC008115.3-201ENST00000614874 549 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 GPC6-202ENST00000617456 792 ntTSL 3 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AC005899.7-201ENST00000618199 588 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AC009093.6-201ENST00000622268 553 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AL356095.2-201ENST00000624025 457 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 LYG2-206ENST00000626374 650 ntTSL 5 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AC012594.1-254ENST00000628002 438 ntTSL 5 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 RHOXF1P2-201ENST00000635431 502 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 SAMMSON-210ENST00000641260 1308 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 EPHB2-201ENST00000374627 4014 ntAPPRIS ALT2 TSL 5 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 BCL6-201ENST00000232014 2710 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 CORIN-202ENST00000502252 3112 ntAPPRIS ALT2 TSL 2 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 KAT14-206ENST00000489634 3152 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 PACRG-201ENST00000337019 1619 ntTSL 2 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AP002370.1-201ENST00000528055 1602 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 C9orf131-205ENST00000421362 3259 ntAPPRIS ALT2 TSL 4 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 GLYAT-202ENST00000344743 1735 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 MFSD8-207ENST00000513559 1813 ntTSL 2 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 PIGK-201ENST00000359130 1926 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 AL049641.1-201ENST00000441055 1948 ntBASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 LRRC8B-206ENST00000640258 8034 ntAPPRIS P1 TSL 5 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 MSL3-203ENST00000361672 2256 ntTSL 2 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 CNTN4-201ENST00000397459 2322 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 ARHGEF7-208ENST00000426073 4921 ntAPPRIS P3 TSL 1 (best) BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 TMEM59-204ENST00000371344 2473 ntTSL 2 BASIC8.17□□□□□ -1.1
VPS9D1Q9Y2B5 CLSTN2-AS1-201ENST00000513309 2693 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AC138409.1-201ENST00000505001 3598 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AFF1-211ENST00000544085 3644 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 ZHX3-218ENST00000560364 4283 ntTSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 CDC42SE2-208ENST00000505065 4352 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 MSL3-201ENST00000312196 2345 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 FOXM1-201ENST00000342628 3475 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AL731537.1-201ENST00000343087 421 ntTSL 3 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 RNU6-216P-201ENST00000363282 104 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 RNU6-1066P-201ENST00000363573 105 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 Y_RNA.301-201ENST00000364990 103 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 Y_RNA.364-201ENST00000365532 101 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 CYP4A22-202ENST00000371890 1780 ntTSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AC068389.3-201ENST00000373384 529 ntTSL 4 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AL133406.1-201ENST00000404904 747 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 MAST4-207ENST00000407621 559 ntTSL 2 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 OR4E2-201ENST00000408935 942 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 RN7SKP152-201ENST00000410444 315 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AL772337.2-201ENST00000411992 981 ntTSL 3 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AC013404.1-201ENST00000413068 249 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 ZNF512-203ENST00000413371 3703 ntTSL 2 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AC018880.1-201ENST00000418898 1319 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 WDHD1-202ENST00000420358 3722 ntTSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 RPL34P6-201ENST00000432390 345 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 RPL12P4-201ENST00000432629 497 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 NRBF2P3-201ENST00000432731 865 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 HMGB1P12-201ENST00000438594 598 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 EIF4BP4-201ENST00000441847 1780 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AL109945.1-201ENST00000448134 687 ntTSL 2 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 RPL26P28-201ENST00000451325 435 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 RPL12P32-201ENST00000484010 494 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AC083904.1-201ENST00000487828 231 ntBASIC8.16□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms