Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 AC068138.1-201ENST00000412635 217 ntBASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 PPP2R2DP1-201ENST00000420526 637 ntBASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 MGAT2P2-201ENST00000427194 797 ntBASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 RN7SKP248-201ENST00000516278 305 ntBASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 SUMO2P19-201ENST00000518920 295 ntBASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 AL023583.1-201ENST00000607518 1143 ntBASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 AL353796.1-201ENST00000561542 3241 ntBASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 RN7SKP6-201ENST00000364795 319 ntBASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 USP9YP9-201ENST00000429406 715 ntBASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 RPS3AP38-201ENST00000435889 763 ntBASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 RPS23P7-201ENST00000466210 444 ntBASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 AC020910.2-201ENST00000603635 610 ntBASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 AL031320.1-201ENST00000604177 357 ntBASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC88AQ3V6T2 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.35
CCDC88AQ3V6T2 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
CCDC88AQ3V6T2 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC6.65□□□□□ -1.35
CCDC88AQ3V6T2 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
CCDC88AQ3V6T2 OR4F13P-202ENST00000560066 2054 ntBASIC6.65□□□□□ -1.35
CCDC88AQ3V6T2 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC6.65□□□□□ -1.35
CCDC88AQ3V6T2 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
CCDC88AQ3V6T2 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.35
CCDC88AQ3V6T2 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
CCDC88AQ3V6T2 AC011933.2-201ENST00000578539 2790 ntBASIC6.65□□□□□ -1.35
CCDC88AQ3V6T2 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 COX6CP17-201ENST00000421389 185 ntBASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 PMS2P3-207ENST00000529061 717 ntBASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AC232271.1-201ENST00000602455 2715 ntBASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 EEF1A1P33-201ENST00000554413 1362 ntBASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 RNGTTP1-201ENST00000420965 728 ntBASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 RPL31P44-201ENST00000447680 377 ntBASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 NDUFA12P1-201ENST00000455914 406 ntBASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AC093720.1-201ENST00000505681 714 ntBASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 HPRT1P1-201ENST00000509498 657 ntBASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AC004980.4-201ENST00000513375 203 ntBASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 RNA5SP373-201ENST00000517271 95 ntBASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AC068790.4-201ENST00000602474 263 ntBASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 AC021422.1-201ENST00000621212 473 ntBASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 213.9 ms