Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
CUX1P39880 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC8.86□□□□□ -0.99
CUX1P39880 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC8.86□□□□□ -0.99
CUX1P39880 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC8.85□□□□□ -0.99
CUX1P39880 GAPDHP15-201ENST00000398586 975 ntBASIC8.85□□□□□ -0.99
CUX1P39880 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC8.85□□□□□ -0.99
CUX1P39880 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC8.85□□□□□ -0.99
CUX1P39880 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC8.85□□□□□ -0.99
CUX1P39880 AC079168.1-201ENST00000458741 345 ntBASIC8.85□□□□□ -0.99
CUX1P39880 FTH1P8-201ENST00000498161 514 ntBASIC8.85□□□□□ -0.99
CUX1P39880 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC8.85□□□□□ -0.99
CUX1P39880 SCARNA20.4-201ENST00000516969 131 ntBASIC8.85□□□□□ -0.99
CUX1P39880 EDDM3DP-201ENST00000554692 434 ntBASIC8.85□□□□□ -0.99
CUX1P39880 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC8.85□□□□□ -0.99
CUX1P39880 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC8.85□□□□□ -0.99
CUX1P39880 AC244107.2-201ENST00000611773 76 ntBASIC8.85□□□□□ -0.99
CUX1P39880 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
CUX1P39880 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC8.85□□□□□ -0.99
CUX1P39880 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC8.85□□□□□ -0.99
CUX1P39880 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC8.85□□□□□ -0.99
CUX1P39880 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC8.85□□□□□ -0.99
CUX1P39880 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
CUX1P39880 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
CUX1P39880 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
CUX1P39880 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
CUX1P39880 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
CUX1P39880 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC8.85□□□□□ -0.99
CUX1P39880 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC8.85□□□□□ -0.99
CUX1P39880 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC8.85□□□□□ -0.99
CUX1P39880 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC8.85□□□□□ -0.99
CUX1P39880 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC8.85□□□□□ -0.99
CUX1P39880 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC8.85□□□□□ -0.99
CUX1P39880 RPL5P25-201ENST00000441148 775 ntBASIC8.85□□□□□ -0.99
CUX1P39880 AC073072.2-201ENST00000447425 348 ntBASIC8.85□□□□□ -0.99
CUX1P39880 RN7SL188P-201ENST00000469842 285 ntBASIC8.85□□□□□ -0.99
CUX1P39880 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC8.85□□□□□ -0.99
CUX1P39880 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC8.85□□□□□ -0.99
CUX1P39880 AC074050.1-201ENST00000563247 211 ntBASIC8.85□□□□□ -0.99
CUX1P39880 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC8.85□□□□□ -0.99
CUX1P39880 AC005252.1-201ENST00000604518 1063 ntBASIC8.85□□□□□ -0.99
CUX1P39880 AC010435.1-201ENST00000623353 1177 ntBASIC8.85□□□□□ -0.99
CUX1P39880 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC8.85□□□□□ -0.99
CUX1P39880 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CUX1P39880 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CUX1P39880 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
CUX1P39880 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC8.84□□□□□ -0.99
CUX1P39880 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC8.84□□□□□ -0.99
CUX1P39880 AC232271.1-201ENST00000602455 2715 ntBASIC8.84□□□□□ -0.99
CUX1P39880 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
CUX1P39880 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC8.84□□□□□ -0.99
CUX1P39880 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC8.84□□□□□ -0.99
CUX1P39880 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
CUX1P39880 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
CUX1P39880 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC8.84□□□□□ -0.99
CUX1P39880 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC8.84□□□□□ -0.99
CUX1P39880 RPL11P3-201ENST00000395256 523 ntBASIC8.84□□□□□ -0.99
CUX1P39880 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CUX1P39880 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC8.84□□□□□ -0.99
CUX1P39880 HMGN2P25-201ENST00000486956 268 ntBASIC8.84□□□□□ -0.99
CUX1P39880 AC140172.1-201ENST00000502928 141 ntBASIC8.84□□□□□ -0.99
CUX1P39880 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CUX1P39880 NPM1P42-201ENST00000560329 862 ntBASIC8.84□□□□□ -0.99
CUX1P39880 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CUX1P39880 AC104687.2-201ENST00000604442 342 ntBASIC8.84□□□□□ -0.99
CUX1P39880 MIR6758-201ENST00000620653 63 ntBASIC8.84□□□□□ -0.99
CUX1P39880 AC144833.1-201ENST00000567953 4089 ntBASIC8.84□□□□□ -0.99
CUX1P39880 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CUX1P39880 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC8.83□□□□□ -1
CUX1P39880 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CUX1P39880 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC8.83□□□□□ -1
CUX1P39880 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC8.83□□□□□ -1
CUX1P39880 AL359715.3-201ENST00000569267 2123 ntBASIC8.83□□□□□ -1
CUX1P39880 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CUX1P39880 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC8.83□□□□□ -1
CUX1P39880 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC8.83□□□□□ -1
CUX1P39880 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CUX1P39880 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC8.83□□□□□ -1
CUX1P39880 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC8.83□□□□□ -1
CUX1P39880 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CUX1P39880 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC8.83□□□□□ -1
CUX1P39880 RPS4XP9-201ENST00000405151 780 ntBASIC8.83□□□□□ -1
CUX1P39880 AC092570.3-201ENST00000420113 693 ntBASIC8.83□□□□□ -1
CUX1P39880 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC8.83□□□□□ -1
CUX1P39880 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC8.83□□□□□ -1
CUX1P39880 COX6B1P5-201ENST00000509843 249 ntBASIC8.83□□□□□ -1
CUX1P39880 GAPDHP62-201ENST00000515313 990 ntBASIC8.83□□□□□ -1
CUX1P39880 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC8.83□□□□□ -1
CUX1P39880 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC8.83□□□□□ -1
CUX1P39880 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC8.83□□□□□ -1
CUX1P39880 AL023583.1-201ENST00000607518 1143 ntBASIC8.83□□□□□ -1
CUX1P39880 NEK3-211ENST00000629912 141 ntTSL 5 BASIC8.83□□□□□ -1
CUX1P39880 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC8.83□□□□□ -1
CUX1P39880 CCDC162P-202ENST00000368966 6751 ntBASIC8.83□□□□□ -1
CUX1P39880 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC8.83□□□□□ -1
CUX1P39880 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CUX1P39880 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC8.82□□□□□ -1
CUX1P39880 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC8.82□□□□□ -1
CUX1P39880 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CUX1P39880 RN7SKP100-201ENST00000411258 284 ntBASIC8.82□□□□□ -1
CUX1P39880 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC8.82□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms