Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC6.48□□□□□ -1.37
BRCA1P38398 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
BRCA1P38398 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.48□□□□□ -1.37
BRCA1P38398 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC6.48□□□□□ -1.37
BRCA1P38398 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
BRCA1P38398 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.47□□□□□ -1.37
BRCA1P38398 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.47□□□□□ -1.37
BRCA1P38398 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
BRCA1P38398 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
BRCA1P38398 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
BRCA1P38398 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
BRCA1P38398 AC009480.2-201ENST00000422916 432 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 HSPD1P12-201ENST00000429127 1069 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC6.47□□□□□ -1.37
BRCA1P38398 AC239367.2-201ENST00000447309 705 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 ATP5LP5-201ENST00000483050 299 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC6.47□□□□□ -1.37
BRCA1P38398 AC109464.1-201ENST00000511091 819 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC6.47□□□□□ -1.37
BRCA1P38398 AC011944.2-201ENST00000624440 683 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.47□□□□□ -1.37
BRCA1P38398 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
BRCA1P38398 ZNF840P-201ENST00000504759 1996 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC6.47□□□□□ -1.37
BRCA1P38398 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.47□□□□□ -1.37
BRCA1P38398 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC6.47□□□□□ -1.37
BRCA1P38398 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
BRCA1P38398 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC6.47□□□□□ -1.37
BRCA1P38398 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC6.47□□□□□ -1.37
BRCA1P38398 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC6.47□□□□□ -1.37
BRCA1P38398 AL009179.1-201ENST00000406085 265 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 ELOCP19-201ENST00000411919 318 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 AL359265.2-201ENST00000434367 631 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 TXNP5-201ENST00000441043 315 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 OR11I1P-201ENST00000486033 954 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 AC025674.1-201ENST00000507074 324 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC6.47□□□□□ -1.37
BRCA1P38398 SCARNA9-201ENST00000530422 353 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 PDCD6IPP2-207ENST00000566321 1069 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 GMFG-202ENST00000594700 397 ntTSL 2 BASIC6.47□□□□□ -1.37
BRCA1P38398 AC010857.1-201ENST00000606398 594 ntBASIC6.47□□□□□ -1.37
BRCA1P38398 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.47□□□□□ -1.37
BRCA1P38398 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
BRCA1P38398 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC6.47□□□□□ -1.37
BRCA1P38398 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
BRCA1P38398 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC6.47□□□□□ -1.37
BRCA1P38398 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.46□□□□□ -1.37
BRCA1P38398 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
BRCA1P38398 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC6.46□□□□□ -1.38
BRCA1P38398 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.46□□□□□ -1.38
BRCA1P38398 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
BRCA1P38398 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.46□□□□□ -1.38
BRCA1P38398 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
BRCA1P38398 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC6.46□□□□□ -1.38
BRCA1P38398 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.46□□□□□ -1.38
BRCA1P38398 IGBP1P3-201ENST00000447449 1000 ntBASIC6.46□□□□□ -1.38
BRCA1P38398 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
BRCA1P38398 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC6.46□□□□□ -1.38
BRCA1P38398 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC6.46□□□□□ -1.38
BRCA1P38398 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
BRCA1P38398 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC6.46□□□□□ -1.38
BRCA1P38398 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC6.46□□□□□ -1.38
BRCA1P38398 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
BRCA1P38398 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC6.46□□□□□ -1.38
BRCA1P38398 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
BRCA1P38398 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
BRCA1P38398 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
BRCA1P38398 AL031123.3-201ENST00000623345 1837 ntBASIC6.46□□□□□ -1.38
BRCA1P38398 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
BRCA1P38398 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.38
BRCA1P38398 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
BRCA1P38398 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
BRCA1P38398 DPY19L1P1-201ENST00000417811 2594 ntBASIC6.45□□□□□ -1.38
BRCA1P38398 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
BRCA1P38398 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.45□□□□□ -1.38
BRCA1P38398 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC6.45□□□□□ -1.38
BRCA1P38398 MIR1182-201ENST00000408363 97 ntBASIC6.45□□□□□ -1.38
BRCA1P38398 SLC9B1P4-201ENST00000421957 1288 ntBASIC6.45□□□□□ -1.38
BRCA1P38398 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC6.45□□□□□ -1.38
BRCA1P38398 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC6.45□□□□□ -1.38
BRCA1P38398 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC6.45□□□□□ -1.38
BRCA1P38398 TXNP2-201ENST00000443918 295 ntBASIC6.45□□□□□ -1.38
BRCA1P38398 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.45□□□□□ -1.38
BRCA1P38398 AC023818.1-201ENST00000498379 384 ntBASIC6.45□□□□□ -1.38
BRCA1P38398 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC6.45□□□□□ -1.38
BRCA1P38398 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC6.45□□□□□ -1.38
BRCA1P38398 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC6.45□□□□□ -1.38
BRCA1P38398 AL512782.1-201ENST00000603093 364 ntBASIC6.45□□□□□ -1.38
BRCA1P38398 AC137695.1-201ENST00000604126 489 ntBASIC6.45□□□□□ -1.38
BRCA1P38398 CASC19-243ENST00000641588 1546 ntBASIC6.45□□□□□ -1.38
BRCA1P38398 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
BRCA1P38398 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
BRCA1P38398 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC6.45□□□□□ -1.38
BRCA1P38398 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
BRCA1P38398 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
BRCA1P38398 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
BRCA1P38398 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC6.45□□□□□ -1.38
BRCA1P38398 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
BRCA1P38398 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
BRCA1P38398 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms