Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LINC01929-201ENST00000589125 3067 ntTSL 2 BASIC8.22□□□□□ -1.09
COL9A1P20849 SH3D19-204ENST00000427414 2656 ntAPPRIS ALT1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL9A1P20849 DHX35-201ENST00000252011 3325 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL9A1P20849 AC007614.2-201ENST00000569877 1851 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 ENY2-211ENST00000521688 2922 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL9A1P20849 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC8.22□□□□□ -1.09
COL9A1P20849 AC009812.3-201ENST00000523871 3766 ntTSL 4 BASIC8.22□□□□□ -1.09
COL9A1P20849 SEC23IP-208ENST00000543134 1461 ntTSL 5 BASIC8.22□□□□□ -1.09
COL9A1P20849 CAST-213ENST00000504465 2336 ntAPPRIS ALT2 TSL 2 BASIC8.22□□□□□ -1.09
COL9A1P20849 LINC00558-201ENST00000569422 3163 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL9A1P20849 AL157777.2-201ENST00000258070 137 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 OR1S2-201ENST00000302592 978 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 TPPP2-201ENST00000321760 752 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL9A1P20849 RPL23AP32-201ENST00000395315 459 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 AL662791.3-201ENST00000413771 776 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 AC011753.4-201ENST00000417974 311 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC8.22□□□□□ -1.09
COL9A1P20849 VDAC1P2-201ENST00000423609 850 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC8.22□□□□□ -1.09
COL9A1P20849 AL158073.1-201ENST00000426848 1104 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 AL356276.2-201ENST00000435919 558 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 RPL7P29-201ENST00000437151 728 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL9A1P20849 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC8.22□□□□□ -1.09
COL9A1P20849 RPL7AP26-201ENST00000488538 813 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 EIF4EP3-201ENST00000498782 656 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 AC008945.1-201ENST00000505144 499 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 AC106798.1-202ENST00000506819 589 ntTSL 4 BASIC8.22□□□□□ -1.09
COL9A1P20849 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC8.22□□□□□ -1.09
COL9A1P20849 SNORA48.10-201ENST00000516965 160 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 FOLH1B-202ENST00000529567 2145 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 AC005363.1-201ENST00000530779 351 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 AP000889.1-201ENST00000530968 660 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 AC009779.4-201ENST00000554248 611 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC8.22□□□□□ -1.09
COL9A1P20849 HMGB1P6-201ENST00000569046 646 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC8.22□□□□□ -1.09
COL9A1P20849 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC8.22□□□□□ -1.09
COL9A1P20849 AC068802.1-201ENST00000603420 732 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC8.22□□□□□ -1.09
COL9A1P20849 NAA50-211ENST00000630058 177 ntTSL 5 BASIC8.22□□□□□ -1.09
COL9A1P20849 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC8.22□□□□□ -1.09
COL9A1P20849 GLI1-201ENST00000228682 3613 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL9A1P20849 OXNAD1-201ENST00000285083 3929 ntAPPRIS P2 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL9A1P20849 NBPF19-203ENST00000578189 5034 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL9A1P20849 SERPINA9-203ENST00000380365 1333 ntAPPRIS P1 TSL 5 BASIC8.22□□□□□ -1.09
COL9A1P20849 AC023283.1-201ENST00000453491 4897 ntTSL 3 BASIC8.22□□□□□ -1.09
COL9A1P20849 OR7A17-203ENST00000642123 3565 ntAPPRIS P1 BASIC8.22□□□□□ -1.09
COL9A1P20849 FBXL17-206ENST00000619412 4059 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL9A1P20849 OR9M1P-202ENST00000641564 3163 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 ZNF469-201ENST00000437464 13203 ntAPPRIS P2 TSL 5 BASIC8.22□□□□□ -1.09
COL9A1P20849 AC009053.1-202ENST00000563377 2051 ntBASIC8.22□□□□□ -1.09
COL9A1P20849 TBC1D30-204ENST00000542120 7433 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
COL9A1P20849 OR1D2-203ENST00000641833 4887 ntAPPRIS P1 BASIC8.21□□□□□ -1.09
COL9A1P20849 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
COL9A1P20849 TCF7L2-216ENST00000534894 3778 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
COL9A1P20849 OFD1P10Y-201ENST00000434110 1433 ntBASIC8.21□□□□□ -1.09
COL9A1P20849 SPTBN1-207ENST00000615901 10226 ntTSL 5 BASIC8.21□□□□□ -1.09
COL9A1P20849 VLDLR-AS1-201ENST00000416826 3167 ntTSL 2 BASIC8.21□□□□□ -1.09
COL9A1P20849 CEP128-209ENST00000555265 4662 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.09
COL9A1P20849 GSTM2-204ENST00000369831 1730 ntTSL 2 BASIC8.21□□□□□ -1.09
COL9A1P20849 RUNX1T1-248ENST00000613302 7687 ntAPPRIS P3 TSL 5 BASIC8.21□□□□□ -1.09
COL9A1P20849 MMGT1-201ENST00000305963 3738 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
COL9A1P20849 NUDCD1-201ENST00000239690 4217 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
COL9A1P20849 SERPINB6-202ENST00000380520 3265 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
COL9A1P20849 AP004147.1-201ENST00000505153 6314 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
COL9A1P20849 SH3GL3-201ENST00000324537 2012 ntTSL 2 BASIC8.21□□□□□ -1.1
COL9A1P20849 AL049776.1-201ENST00000624600 2025 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 AL133230.1-201ENST00000431019 4587 ntTSL 2 BASIC8.21□□□□□ -1.1
COL9A1P20849 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC8.21□□□□□ -1.1
COL9A1P20849 Y_RNA.100-201ENST00000363141 102 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 Y_RNA.148-201ENST00000363557 117 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 CD3D-202ENST00000392884 476 ntTSL 2 BASIC8.21□□□□□ -1.1
COL9A1P20849 MRPL42P2-201ENST00000403169 426 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 AL033519.1-201ENST00000407266 307 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 CHEK2P3-201ENST00000416118 248 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC8.21□□□□□ -1.1
COL9A1P20849 IGKV1OR9-1-201ENST00000424370 284 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 DUTP6-201ENST00000425573 462 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC8.21□□□□□ -1.1
COL9A1P20849 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC8.21□□□□□ -1.1
COL9A1P20849 Z83313.1-201ENST00000433780 718 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 FAM103A2P-201ENST00000444122 354 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 MTCO1P27-201ENST00000448269 226 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 AC239798.1-201ENST00000449024 1176 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 AL645937.3-201ENST00000453647 936 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC8.21□□□□□ -1.1
COL9A1P20849 DUBR-205ENST00000495228 411 ntTSL 2 BASIC8.21□□□□□ -1.1
COL9A1P20849 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC8.21□□□□□ -1.1
COL9A1P20849 AC016559.1-201ENST00000511420 199 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 RN7SKP295-201ENST00000517264 153 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 AC044836.1-201ENST00000519514 274 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC8.21□□□□□ -1.1
COL9A1P20849 AC084337.1-201ENST00000524809 686 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC8.21□□□□□ -1.1
COL9A1P20849 AC068305.2-201ENST00000550567 1205 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 NMNAT1P1-201ENST00000554095 876 ntBASIC8.21□□□□□ -1.1
COL9A1P20849 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC8.21□□□□□ -1.1
COL9A1P20849 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
COL9A1P20849 AC091932.1-201ENST00000569381 427 ntBASIC8.21□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms