Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 SNORA78-201ENST00000459373 127 ntBASIC19.72■□□□□ 0.75
DKK3Q9UBP4 AP002982.1-201ENST00000492365 877 ntBASIC19.72■□□□□ 0.75
DKK3Q9UBP4 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
DKK3Q9UBP4 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 NIFKP9-201ENST00000419265 221 ntBASIC19.7■□□□□ 0.74
DKK3Q9UBP4 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 KSR1P1-201ENST00000446298 240 ntBASIC19.7■□□□□ 0.74
DKK3Q9UBP4 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
DKK3Q9UBP4 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 KRT17P2-201ENST00000300992 1314 ntBASIC19.69■□□□□ 0.74
DKK3Q9UBP4 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
DKK3Q9UBP4 TCF3P1-201ENST00000423021 1937 ntBASIC19.68■□□□□ 0.74
DKK3Q9UBP4 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
DKK3Q9UBP4 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms