Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SMARCAL1Q9NZC9 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
SMARCAL1Q9NZC9 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
SMARCAL1Q9NZC9 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SMARCAL1Q9NZC9 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.64■□□□□ 0.9
SMARCAL1Q9NZC9 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SMARCAL1Q9NZC9 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCAL1Q9NZC9 AP001271.2-201ENST00000624018 1556 ntBASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCAL1Q9NZC9 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 AC016769.1-201ENST00000409132 1010 ntBASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 AL161938.1-201ENST00000569833 2180 ntBASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 AL138781.2-201ENST00000617896 1843 ntBASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.62■□□□□ 0.89
SMARCAL1Q9NZC9 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 KRT8P20-201ENST00000423953 1409 ntBASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCAL1Q9NZC9 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms