Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 NUDT16P1-203ENST00000513809 620 ntBASIC18.61■□□□□ 0.57
SCN3AQ9NY46 RN7SL471P-201ENST00000580476 299 ntBASIC18.61■□□□□ 0.57
SCN3AQ9NY46 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.61■□□□□ 0.57
SCN3AQ9NY46 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN3AQ9NY46 TMEM179-206ENST00000616017 1645 ntBASIC18.6■□□□□ 0.57
SCN3AQ9NY46 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN3AQ9NY46 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SCN3AQ9NY46 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN3AQ9NY46 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN3AQ9NY46 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN3AQ9NY46 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.6■□□□□ 0.57
SCN3AQ9NY46 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN3AQ9NY46 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN3AQ9NY46 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN3AQ9NY46 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.6■□□□□ 0.57
SCN3AQ9NY46 AP006587.1-201ENST00000534129 1502 ntBASIC18.6■□□□□ 0.57
SCN3AQ9NY46 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SCN3AQ9NY46 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SCN3AQ9NY46 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.6■□□□□ 0.57
SCN3AQ9NY46 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.59■□□□□ 0.57
SCN3AQ9NY46 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 AC008550.1-201ENST00000511500 884 ntBASIC18.59■□□□□ 0.57
SCN3AQ9NY46 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 AL353708.3-201ENST00000610272 989 ntBASIC18.59■□□□□ 0.57
SCN3AQ9NY46 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN3AQ9NY46 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN3AQ9NY46 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN3AQ9NY46 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN3AQ9NY46 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SCN3AQ9NY46 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN3AQ9NY46 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN3AQ9NY46 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN3AQ9NY46 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN3AQ9NY46 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
SCN3AQ9NY46 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
SCN3AQ9NY46 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
SCN3AQ9NY46 KRT8P8-201ENST00000434750 1448 ntBASIC18.58■□□□□ 0.56
SCN3AQ9NY46 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SCN3AQ9NY46 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SCN3AQ9NY46 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SCN3AQ9NY46 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SCN3AQ9NY46 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SCN3AQ9NY46 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SCN3AQ9NY46 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms