Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCIF1Q9H4Z3 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
PCIF1Q9H4Z3 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCIF1Q9H4Z3 AP006587.1-201ENST00000534129 1502 ntBASIC21.49■■□□□ 1.03
PCIF1Q9H4Z3 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
PCIF1Q9H4Z3 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
PCIF1Q9H4Z3 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 PRKY-204ENST00000533551 1019 ntBASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 RN7SL471P-201ENST00000580476 299 ntBASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCIF1Q9H4Z3 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 PRORSD1P-201ENST00000295112 541 ntBASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
PCIF1Q9H4Z3 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 C1QBPP2-201ENST00000528754 825 ntBASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCIF1Q9H4Z3 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
PCIF1Q9H4Z3 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 GOLGA6L3-201ENST00000507199 1679 ntBASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 KRASP1-201ENST00000407852 552 ntBASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
PCIF1Q9H4Z3 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms