Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.65■□□□□ 0.9
CDX2Q99626 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.65■□□□□ 0.9
CDX2Q99626 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.65■□□□□ 0.9
CDX2Q99626 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX2Q99626 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX2Q99626 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDX2Q99626 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.65■□□□□ 0.9
CDX2Q99626 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CDX2Q99626 AC092597.1-201ENST00000487352 616 ntBASIC20.65■□□□□ 0.9
CDX2Q99626 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.65■□□□□ 0.9
CDX2Q99626 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.65■□□□□ 0.9
CDX2Q99626 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.65■□□□□ 0.9
CDX2Q99626 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.65■□□□□ 0.9
CDX2Q99626 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.65■□□□□ 0.9
CDX2Q99626 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX2Q99626 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CDX2Q99626 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CDX2Q99626 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
CDX2Q99626 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.64■□□□□ 0.9
CDX2Q99626 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.64■□□□□ 0.9
CDX2Q99626 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CDX2Q99626 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
CDX2Q99626 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
CDX2Q99626 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDX2Q99626 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.64■□□□□ 0.89
CDX2Q99626 KRT18P31-201ENST00000506277 1292 ntBASIC20.64■□□□□ 0.89
CDX2Q99626 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.64■□□□□ 0.89
CDX2Q99626 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CDX2Q99626 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CDX2Q99626 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.64■□□□□ 0.89
CDX2Q99626 AL121912.1-201ENST00000603683 238 ntBASIC20.64■□□□□ 0.89
CDX2Q99626 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.64■□□□□ 0.89
CDX2Q99626 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.64■□□□□ 0.89
CDX2Q99626 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CDX2Q99626 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDX2Q99626 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
CDX2Q99626 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.64■□□□□ 0.89
CDX2Q99626 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CDX2Q99626 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDX2Q99626 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDX2Q99626 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.64■□□□□ 0.89
CDX2Q99626 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX2Q99626 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CDX2Q99626 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX2Q99626 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX2Q99626 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX2Q99626 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.63■□□□□ 0.89
CDX2Q99626 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.63■□□□□ 0.89
CDX2Q99626 FOSL1P1-201ENST00000511041 816 ntBASIC20.63■□□□□ 0.89
CDX2Q99626 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.63■□□□□ 0.89
CDX2Q99626 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX2Q99626 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.63■□□□□ 0.89
CDX2Q99626 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX2Q99626 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX2Q99626 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX2Q99626 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.63■□□□□ 0.89
CDX2Q99626 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.63■□□□□ 0.89
CDX2Q99626 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.62■□□□□ 0.89
CDX2Q99626 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDX2Q99626 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDX2Q99626 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDX2Q99626 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDX2Q99626 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDX2Q99626 RASA4DP-201ENST00000460726 1199 ntBASIC20.62■□□□□ 0.89
CDX2Q99626 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.62■□□□□ 0.89
CDX2Q99626 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDX2Q99626 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDX2Q99626 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDX2Q99626 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDX2Q99626 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.62■□□□□ 0.89
CDX2Q99626 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDX2Q99626 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDX2Q99626 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.62■□□□□ 0.89
CDX2Q99626 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
CDX2Q99626 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CDX2Q99626 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDX2Q99626 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDX2Q99626 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDX2Q99626 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDX2Q99626 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.61■□□□□ 0.89
CDX2Q99626 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.61■□□□□ 0.89
CDX2Q99626 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDX2Q99626 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDX2Q99626 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CDX2Q99626 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.61■□□□□ 0.89
CDX2Q99626 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.61■□□□□ 0.89
CDX2Q99626 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.61■□□□□ 0.89
CDX2Q99626 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDX2Q99626 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.61■□□□□ 0.89
CDX2Q99626 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.61■□□□□ 0.89
CDX2Q99626 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.61■□□□□ 0.89
CDX2Q99626 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC20.61■□□□□ 0.89
CDX2Q99626 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.61■□□□□ 0.89
CDX2Q99626 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.61■□□□□ 0.89
CDX2Q99626 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.61■□□□□ 0.89
CDX2Q99626 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDX2Q99626 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDX2Q99626 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
CDX2Q99626 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
CDX2Q99626 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms