Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SKA3Q8IX90 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SKA3Q8IX90 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SKA3Q8IX90 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.35■□□□□ 0.37
SKA3Q8IX90 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.35■□□□□ 0.37
SKA3Q8IX90 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SKA3Q8IX90 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.35■□□□□ 0.37
SKA3Q8IX90 AC026366.1-201ENST00000488803 879 ntBASIC17.35■□□□□ 0.37
SKA3Q8IX90 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SKA3Q8IX90 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SKA3Q8IX90 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.35■□□□□ 0.37
SKA3Q8IX90 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.35■□□□□ 0.37
SKA3Q8IX90 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.35■□□□□ 0.37
SKA3Q8IX90 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SKA3Q8IX90 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.35■□□□□ 0.37
SKA3Q8IX90 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SKA3Q8IX90 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SKA3Q8IX90 AC018553.1-201ENST00000616682 1458 ntBASIC17.35■□□□□ 0.37
SKA3Q8IX90 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.35■□□□□ 0.37
SKA3Q8IX90 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.35■□□□□ 0.37
SKA3Q8IX90 TMEM179-206ENST00000616017 1645 ntBASIC17.35■□□□□ 0.37
SKA3Q8IX90 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SKA3Q8IX90 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SKA3Q8IX90 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.35■□□□□ 0.37
SKA3Q8IX90 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SKA3Q8IX90 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SKA3Q8IX90 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SKA3Q8IX90 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.35■□□□□ 0.37
SKA3Q8IX90 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SKA3Q8IX90 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SKA3Q8IX90 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
SKA3Q8IX90 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.34■□□□□ 0.37
SKA3Q8IX90 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SKA3Q8IX90 POM121L13P-201ENST00000422362 380 ntBASIC17.34■□□□□ 0.37
SKA3Q8IX90 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.34■□□□□ 0.37
SKA3Q8IX90 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.34■□□□□ 0.37
SKA3Q8IX90 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SKA3Q8IX90 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SKA3Q8IX90 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
SKA3Q8IX90 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SKA3Q8IX90 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.34■□□□□ 0.37
SKA3Q8IX90 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.34■□□□□ 0.37
SKA3Q8IX90 AFG3L1P-217ENST00000557444 2447 ntBASIC17.34■□□□□ 0.37
SKA3Q8IX90 MIR4651-201ENST00000582622 73 ntBASIC17.34■□□□□ 0.37
SKA3Q8IX90 AC116351.2-201ENST00000606540 1585 ntBASIC17.34■□□□□ 0.37
SKA3Q8IX90 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SKA3Q8IX90 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SKA3Q8IX90 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SKA3Q8IX90 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
SKA3Q8IX90 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.33■□□□□ 0.37
SKA3Q8IX90 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SKA3Q8IX90 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.33■□□□□ 0.37
SKA3Q8IX90 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SKA3Q8IX90 AC009237.14-201ENST00000609975 1594 ntBASIC17.33■□□□□ 0.37
SKA3Q8IX90 AP001271.2-201ENST00000624018 1556 ntBASIC17.33■□□□□ 0.37
SKA3Q8IX90 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SKA3Q8IX90 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SKA3Q8IX90 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.33■□□□□ 0.36
SKA3Q8IX90 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SKA3Q8IX90 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SKA3Q8IX90 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SKA3Q8IX90 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SKA3Q8IX90 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SKA3Q8IX90 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SKA3Q8IX90 ESRRAP1-201ENST00000400596 1257 ntBASIC17.33■□□□□ 0.36
SKA3Q8IX90 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.33■□□□□ 0.36
SKA3Q8IX90 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SKA3Q8IX90 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.33■□□□□ 0.36
SKA3Q8IX90 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SKA3Q8IX90 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SKA3Q8IX90 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SKA3Q8IX90 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
SKA3Q8IX90 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
SKA3Q8IX90 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.33■□□□□ 0.36
SKA3Q8IX90 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SKA3Q8IX90 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.33■□□□□ 0.36
SKA3Q8IX90 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SKA3Q8IX90 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SKA3Q8IX90 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
SKA3Q8IX90 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 155.5 ms