Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 FEM1AP4-201ENST00000443167 1987 ntBASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 AC005332.1-201ENST00000577698 1310 ntBASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.22■□□□□ 0.19
CSPG4Q6UVK1 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CSPG4Q6UVK1 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CSPG4Q6UVK1 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CSPG4Q6UVK1 AL359075.1-203ENST00000462729 1002 ntBASIC16.21■□□□□ 0.19
CSPG4Q6UVK1 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.21■□□□□ 0.19
CSPG4Q6UVK1 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CSPG4Q6UVK1 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC16.21■□□□□ 0.19
CSPG4Q6UVK1 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CSPG4Q6UVK1 H19-201ENST00000411754 1788 ntTSL 5 BASIC16.21■□□□□ 0.19
CSPG4Q6UVK1 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CSPG4Q6UVK1 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CSPG4Q6UVK1 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
CSPG4Q6UVK1 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CSPG4Q6UVK1 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
CSPG4Q6UVK1 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CSPG4Q6UVK1 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CSPG4Q6UVK1 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CSPG4Q6UVK1 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC16.21■□□□□ 0.18
CSPG4Q6UVK1 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CSPG4Q6UVK1 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 AC092338.2-201ENST00000568827 1415 ntBASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 AC026310.3-201ENST00000625186 2373 ntBASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 RCC2P6-201ENST00000526625 1557 ntBASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CSPG4Q6UVK1 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 RN7SL510P-201ENST00000581311 263 ntBASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 AC116562.4-202ENST00000641738 218 ntBASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CSPG4Q6UVK1 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 AC005229.4-201ENST00000610085 2198 ntBASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 PLK5-205ENST00000642079 1969 ntBASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms