Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CCDC40Q4G0X9 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CCDC40Q4G0X9 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.04
CCDC40Q4G0X9 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CCDC40Q4G0X9 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
CCDC40Q4G0X9 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 AC093484.2-201ENST00000580996 2166 ntBASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.57■■□□□ 1.04
CCDC40Q4G0X9 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 AC116351.2-201ENST00000606540 1585 ntBASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
CCDC40Q4G0X9 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 AC097658.1-201ENST00000475555 843 ntBASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 AC006557.6-201ENST00000623071 864 ntBASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC40Q4G0X9 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 AC073210.2-201ENST00000430369 194 ntBASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.54■■□□□ 1.04
CCDC40Q4G0X9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms