Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 KRT8P20-201ENST00000423953 1409 ntBASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 BX664615.1-201ENST00000443558 458 ntBASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 AC010653.2-201ENST00000623505 997 ntBASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
CCDC88AQ3V6T2 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC88AQ3V6T2 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC88AQ3V6T2 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC24.12■■□□□ 1.45
CCDC88AQ3V6T2 AC246785.2-201ENST00000432512 513 ntBASIC24.12■■□□□ 1.45
CCDC88AQ3V6T2 CCR12P-201ENST00000446203 998 ntBASIC24.12■■□□□ 1.45
CCDC88AQ3V6T2 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC88AQ3V6T2 AC131212.4-201ENST00000623606 975 ntBASIC24.12■■□□□ 1.45
CCDC88AQ3V6T2 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC24.12■■□□□ 1.45
CCDC88AQ3V6T2 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC88AQ3V6T2 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC88AQ3V6T2 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC88AQ3V6T2 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC88AQ3V6T2 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC24.12■■□□□ 1.45
CCDC88AQ3V6T2 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC88AQ3V6T2 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 AC011558.1-201ENST00000623459 338 ntBASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 AL023973.1-201ENST00000624619 620 ntBASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC88AQ3V6T2 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 AC023511.2-201ENST00000618803 211 ntBASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC24.1■■□□□ 1.45
CCDC88AQ3V6T2 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 DAP-202ENST00000432074 1048 ntTSL 2 BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 AL441883.1-201ENST00000566170 1045 ntBASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC24.09■■□□□ 1.45
CCDC88AQ3V6T2 DPP3P2-201ENST00000416030 1696 ntBASIC24.08■■□□□ 1.45
CCDC88AQ3V6T2 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC24.08■■□□□ 1.45
CCDC88AQ3V6T2 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC24.08■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms