Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 SERPINH1P1-201ENST00000419794 1249 ntBASIC15.95■□□□□ 0.14
CDX1P47902 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC15.95■□□□□ 0.14
CDX1P47902 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC15.95■□□□□ 0.14
CDX1P47902 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC15.95■□□□□ 0.14
CDX1P47902 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC15.95■□□□□ 0.14
CDX1P47902 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
CDX1P47902 AL589743.5-201ENST00000616611 1050 ntBASIC15.95■□□□□ 0.14
CDX1P47902 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC15.95■□□□□ 0.14
CDX1P47902 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC15.95■□□□□ 0.14
CDX1P47902 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC15.94■□□□□ 0.14
CDX1P47902 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC15.94■□□□□ 0.14
CDX1P47902 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
CDX1P47902 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC15.94■□□□□ 0.14
CDX1P47902 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
CDX1P47902 KRT18P68-201ENST00000392293 1000 ntBASIC15.94■□□□□ 0.14
CDX1P47902 RHEB-204ENST00000472642 900 ntTSL 3 BASIC15.94■□□□□ 0.14
CDX1P47902 AC091874.3-201ENST00000512672 1195 ntBASIC15.94■□□□□ 0.14
CDX1P47902 AC098934.4-201ENST00000564127 592 ntBASIC15.94■□□□□ 0.14
CDX1P47902 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC15.94■□□□□ 0.14
CDX1P47902 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
CDX1P47902 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
CDX1P47902 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
CDX1P47902 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC15.94■□□□□ 0.14
CDX1P47902 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
CDX1P47902 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC15.94■□□□□ 0.14
CDX1P47902 EXOC3-AS1-202ENST00000623673 1663 ntBASIC15.94■□□□□ 0.14
CDX1P47902 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 AC093503.3-201ENST00000624917 2352 ntBASIC15.94■□□□□ 0.14
CDX1P47902 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC15.94■□□□□ 0.14
CDX1P47902 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CDX1P47902 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC15.94■□□□□ 0.14
CDX1P47902 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC15.94■□□□□ 0.14
CDX1P47902 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC15.94■□□□□ 0.14
CDX1P47902 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDX1P47902 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC15.93■□□□□ 0.14
CDX1P47902 AP000997.3-201ENST00000623333 2250 ntBASIC15.93■□□□□ 0.14
CDX1P47902 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CDX1P47902 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDX1P47902 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC15.93■□□□□ 0.14
CDX1P47902 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDX1P47902 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
CDX1P47902 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDX1P47902 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDX1P47902 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC15.93■□□□□ 0.14
CDX1P47902 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
CDX1P47902 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC15.93■□□□□ 0.14
CDX1P47902 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC15.93■□□□□ 0.14
CDX1P47902 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC15.93■□□□□ 0.14
CDX1P47902 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CDX1P47902 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC15.93■□□□□ 0.14
CDX1P47902 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC15.93■□□□□ 0.14
CDX1P47902 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CDX1P47902 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDX1P47902 MYC-209ENST00000641252 345 ntBASIC15.93■□□□□ 0.14
CDX1P47902 USP39-204ENST00000409766 2033 ntTSL 2 BASIC15.93■□□□□ 0.14
CDX1P47902 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CDX1P47902 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC15.93■□□□□ 0.14
CDX1P47902 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDX1P47902 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
CDX1P47902 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDX1P47902 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDX1P47902 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC15.93■□□□□ 0.14
CDX1P47902 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDX1P47902 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.93■□□□□ 0.14
CDX1P47902 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
CDX1P47902 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
CDX1P47902 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC15.92■□□□□ 0.14
CDX1P47902 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
CDX1P47902 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
CDX1P47902 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 CYP21A1P-202ENST00000354927 1481 ntBASIC15.92■□□□□ 0.14
CDX1P47902 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms