Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC091390.4-202ENST00000476426 537 ntBASIC19.8■□□□□ 0.76
TNFRSF4P43489 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TNFRSF4P43489 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.8■□□□□ 0.76
TNFRSF4P43489 FAM87A-204ENST00000613235 858 ntBASIC19.8■□□□□ 0.76
TNFRSF4P43489 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.8■□□□□ 0.76
TNFRSF4P43489 AC116562.4-202ENST00000641738 218 ntBASIC19.8■□□□□ 0.76
TNFRSF4P43489 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
TNFRSF4P43489 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TNFRSF4P43489 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
TNFRSF4P43489 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TNFRSF4P43489 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.79■□□□□ 0.76
TNFRSF4P43489 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TNFRSF4P43489 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TNFRSF4P43489 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.79■□□□□ 0.76
TNFRSF4P43489 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
TNFRSF4P43489 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.79■□□□□ 0.76
TNFRSF4P43489 SLC25A1P2-201ENST00000430693 912 ntBASIC19.79■□□□□ 0.76
TNFRSF4P43489 Z85996.1-201ENST00000494644 937 ntBASIC19.79■□□□□ 0.76
TNFRSF4P43489 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.79■□□□□ 0.76
TNFRSF4P43489 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.79■□□□□ 0.76
TNFRSF4P43489 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
TNFRSF4P43489 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
TNFRSF4P43489 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TNFRSF4P43489 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TNFRSF4P43489 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.79■□□□□ 0.76
TNFRSF4P43489 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.79■□□□□ 0.76
TNFRSF4P43489 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TNFRSF4P43489 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.79■□□□□ 0.76
TNFRSF4P43489 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TNFRSF4P43489 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFRSF4P43489 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TNFRSF4P43489 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFRSF4P43489 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFRSF4P43489 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TNFRSF4P43489 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFRSF4P43489 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFRSF4P43489 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFRSF4P43489 INGX-201ENST00000359239 846 ntBASIC19.78■□□□□ 0.76
TNFRSF4P43489 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
TNFRSF4P43489 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.78■□□□□ 0.76
TNFRSF4P43489 HMGA1P5-201ENST00000412453 271 ntBASIC19.78■□□□□ 0.76
TNFRSF4P43489 BX664615.1-201ENST00000443558 458 ntBASIC19.78■□□□□ 0.76
TNFRSF4P43489 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.78■□□□□ 0.76
TNFRSF4P43489 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.78■□□□□ 0.76
TNFRSF4P43489 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.78■□□□□ 0.76
TNFRSF4P43489 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
TNFRSF4P43489 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.78■□□□□ 0.76
TNFRSF4P43489 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.78■□□□□ 0.76
TNFRSF4P43489 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.78■□□□□ 0.76
TNFRSF4P43489 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFRSF4P43489 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFRSF4P43489 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
TNFRSF4P43489 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
TNFRSF4P43489 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.78■□□□□ 0.76
TNFRSF4P43489 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFRSF4P43489 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TNFRSF4P43489 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TNFRSF4P43489 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TNFRSF4P43489 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
TNFRSF4P43489 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
TNFRSF4P43489 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TNFRSF4P43489 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.77■□□□□ 0.76
TNFRSF4P43489 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.77■□□□□ 0.76
TNFRSF4P43489 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.77■□□□□ 0.76
TNFRSF4P43489 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TNFRSF4P43489 AL160286.2-201ENST00000567150 934 ntBASIC19.77■□□□□ 0.76
TNFRSF4P43489 NTF6B-201ENST00000591913 560 ntBASIC19.77■□□□□ 0.76
TNFRSF4P43489 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TNFRSF4P43489 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
TNFRSF4P43489 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
TNFRSF4P43489 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.77■□□□□ 0.75
TNFRSF4P43489 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
TNFRSF4P43489 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.77■□□□□ 0.75
TNFRSF4P43489 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.76■□□□□ 0.75
TNFRSF4P43489 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TNFRSF4P43489 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TNFRSF4P43489 AC020907.5-201ENST00000624372 1936 ntBASIC19.76■□□□□ 0.75
TNFRSF4P43489 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.76■□□□□ 0.75
TNFRSF4P43489 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TNFRSF4P43489 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TNFRSF4P43489 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.76■□□□□ 0.75
TNFRSF4P43489 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TNFRSF4P43489 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TNFRSF4P43489 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
TNFRSF4P43489 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.76■□□□□ 0.75
TNFRSF4P43489 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
TNFRSF4P43489 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
TNFRSF4P43489 AC006011.2-201ENST00000621313 1158 ntBASIC19.76■□□□□ 0.75
TNFRSF4P43489 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.76■□□□□ 0.75
TNFRSF4P43489 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TNFRSF4P43489 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
TNFRSF4P43489 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TNFRSF4P43489 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TNFRSF4P43489 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.75■□□□□ 0.75
TNFRSF4P43489 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TNFRSF4P43489 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TNFRSF4P43489 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TNFRSF4P43489 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
TNFRSF4P43489 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
TNFRSF4P43489 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms