Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC018445.3-201ENST00000624177 1945 ntBASIC18.45■□□□□ 0.54
SOX3P41225 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SOX3P41225 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.45■□□□□ 0.54
SOX3P41225 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SOX3P41225 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SOX3P41225 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SOX3P41225 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
SOX3P41225 AL158047.1-201ENST00000445918 881 ntBASIC18.45■□□□□ 0.54
SOX3P41225 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
SOX3P41225 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.45■□□□□ 0.54
SOX3P41225 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SOX3P41225 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SOX3P41225 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SOX3P41225 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SOX3P41225 AC098818.2-201ENST00000564925 2320 ntBASIC18.45■□□□□ 0.54
SOX3P41225 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.45■□□□□ 0.54
SOX3P41225 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SOX3P41225 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SOX3P41225 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SOX3P41225 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX3P41225 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX3P41225 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX3P41225 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
SOX3P41225 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SOX3P41225 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX3P41225 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SOX3P41225 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SOX3P41225 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SOX3P41225 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
SOX3P41225 HLA-G-202ENST00000376815 851 ntBASIC18.44■□□□□ 0.54
SOX3P41225 HLA-G-203ENST00000376818 1127 ntBASIC18.44■□□□□ 0.54
SOX3P41225 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.44■□□□□ 0.54
SOX3P41225 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX3P41225 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.44■□□□□ 0.54
SOX3P41225 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
SOX3P41225 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.44■□□□□ 0.54
SOX3P41225 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
SOX3P41225 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.44■□□□□ 0.54
SOX3P41225 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SOX3P41225 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.44■□□□□ 0.54
SOX3P41225 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.44■□□□□ 0.54
SOX3P41225 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SOX3P41225 AL031963.3-201ENST00000606441 850 ntBASIC18.44■□□□□ 0.54
SOX3P41225 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.44■□□□□ 0.54
SOX3P41225 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX3P41225 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
SOX3P41225 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX3P41225 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SOX3P41225 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
SOX3P41225 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SOX3P41225 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SOX3P41225 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
SOX3P41225 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SOX3P41225 KRT8P20-201ENST00000423953 1409 ntBASIC18.43■□□□□ 0.54
SOX3P41225 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SOX3P41225 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
SOX3P41225 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.43■□□□□ 0.54
SOX3P41225 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.43■□□□□ 0.54
SOX3P41225 C1QBPP2-201ENST00000528754 825 ntBASIC18.43■□□□□ 0.54
SOX3P41225 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.43■□□□□ 0.54
SOX3P41225 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
SOX3P41225 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SOX3P41225 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SOX3P41225 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SOX3P41225 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.43■□□□□ 0.54
SOX3P41225 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SOX3P41225 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SOX3P41225 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SOX3P41225 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.43■□□□□ 0.54
SOX3P41225 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SOX3P41225 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.42■□□□□ 0.54
SOX3P41225 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.42■□□□□ 0.54
SOX3P41225 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
SOX3P41225 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX3P41225 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX3P41225 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SOX3P41225 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX3P41225 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX3P41225 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX3P41225 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SOX3P41225 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SOX3P41225 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX3P41225 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.42■□□□□ 0.54
SOX3P41225 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX3P41225 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SOX3P41225 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.42■□□□□ 0.54
SOX3P41225 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SOX3P41225 RN7SL471P-201ENST00000580476 299 ntBASIC18.42■□□□□ 0.54
SOX3P41225 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
SOX3P41225 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.42■□□□□ 0.54
SOX3P41225 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.42■□□□□ 0.54
SOX3P41225 AC066615.1-201ENST00000640911 628 ntBASIC18.42■□□□□ 0.54
SOX3P41225 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SOX3P41225 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.42■□□□□ 0.54
SOX3P41225 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX3P41225 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX3P41225 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.42■□□□□ 0.54
SOX3P41225 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SOX3P41225 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
SOX3P41225 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms