Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXD11P31277 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC20.69■□□□□ 0.9
HOXD11P31277 AC063952.2-201ENST00000498792 1227 ntBASIC20.69■□□□□ 0.9
HOXD11P31277 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC20.69■□□□□ 0.9
HOXD11P31277 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.69■□□□□ 0.9
HOXD11P31277 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXD11P31277 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXD11P31277 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXD11P31277 TP73-AS1-207ENST00000624167 988 ntBASIC20.69■□□□□ 0.9
HOXD11P31277 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXD11P31277 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.69■□□□□ 0.9
HOXD11P31277 AC005261.6-201ENST00000623072 1387 ntBASIC20.69■□□□□ 0.9
HOXD11P31277 RBM5-AS1-201ENST00000630404 1386 ntBASIC20.69■□□□□ 0.9
HOXD11P31277 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
HOXD11P31277 LINC01990-201ENST00000609293 1487 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXD11P31277 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXD11P31277 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD11P31277 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD11P31277 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD11P31277 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD11P31277 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD11P31277 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD11P31277 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXD11P31277 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
HOXD11P31277 LIN28AP1-201ENST00000429574 405 ntBASIC20.68■□□□□ 0.9
HOXD11P31277 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXD11P31277 SCAND3P1-201ENST00000439854 1060 ntBASIC20.68■□□□□ 0.9
HOXD11P31277 LIF-AS1-201ENST00000447565 808 ntTSL 3 BASIC20.68■□□□□ 0.9
HOXD11P31277 RPL22L1-202ENST00000463836 506 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
HOXD11P31277 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC20.68■□□□□ 0.9
HOXD11P31277 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
HOXD11P31277 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC20.68■□□□□ 0.9
HOXD11P31277 AP000842.1-201ENST00000524467 698 ntBASIC20.68■□□□□ 0.9
HOXD11P31277 AC010203.1-204ENST00000548782 407 ntBASIC20.68■□□□□ 0.9
HOXD11P31277 AC234775.3-201ENST00000564612 656 ntBASIC20.68■□□□□ 0.9
HOXD11P31277 AC006116.5-201ENST00000591936 559 ntBASIC20.68■□□□□ 0.9
HOXD11P31277 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
HOXD11P31277 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.68■□□□□ 0.9
HOXD11P31277 AC139530.3-201ENST00000620344 690 ntBASIC20.68■□□□□ 0.9
HOXD11P31277 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD11P31277 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD11P31277 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
HOXD11P31277 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
HOXD11P31277 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXD11P31277 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.68■□□□□ 0.9
HOXD11P31277 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD11P31277 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD11P31277 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC20.67■□□□□ 0.9
HOXD11P31277 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD11P31277 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD11P31277 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
HOXD11P31277 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
HOXD11P31277 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXD11P31277 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD11P31277 RNU6-925P-201ENST00000384629 104 ntBASIC20.67■□□□□ 0.9
HOXD11P31277 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD11P31277 HCG4P8-203ENST00000443049 980 ntBASIC20.67■□□□□ 0.9
HOXD11P31277 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXD11P31277 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.67■□□□□ 0.9
HOXD11P31277 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.67■□□□□ 0.9
HOXD11P31277 AP000525.1-201ENST00000608286 694 ntBASIC20.67■□□□□ 0.9
HOXD11P31277 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD11P31277 AC022211.4-201ENST00000625094 2161 ntBASIC20.67■□□□□ 0.9
HOXD11P31277 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD11P31277 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
HOXD11P31277 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXD11P31277 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD11P31277 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD11P31277 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
HOXD11P31277 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXD11P31277 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.66■□□□□ 0.9
HOXD11P31277 UNC93B2-201ENST00000285383 730 ntBASIC20.66■□□□□ 0.9
HOXD11P31277 MIR1238-201ENST00000408483 83 ntBASIC20.66■□□□□ 0.9
HOXD11P31277 AC073143.1-201ENST00000436316 395 ntBASIC20.66■□□□□ 0.9
HOXD11P31277 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.66■□□□□ 0.9
HOXD11P31277 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXD11P31277 HULC-201ENST00000503668 556 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXD11P31277 AL589666.1-201ENST00000503906 835 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
HOXD11P31277 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.66■□□□□ 0.9
HOXD11P31277 ASB8-215ENST00000540782 659 ntTSL 3 BASIC20.66■□□□□ 0.9
HOXD11P31277 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
HOXD11P31277 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.66■□□□□ 0.9
HOXD11P31277 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC20.66■□□□□ 0.9
HOXD11P31277 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.66■□□□□ 0.9
HOXD11P31277 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXD11P31277 AC010947.1-201ENST00000623454 693 ntBASIC20.66■□□□□ 0.9
HOXD11P31277 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
HOXD11P31277 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
HOXD11P31277 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
HOXD11P31277 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXD11P31277 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.65■□□□□ 0.9
HOXD11P31277 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXD11P31277 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXD11P31277 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXD11P31277 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXD11P31277 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXD11P31277 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
HOXD11P31277 LINC02001-202ENST00000638682 1504 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXD11P31277 CYP2D8P-201ENST00000433633 1490 ntBASIC20.65■□□□□ 0.9
HOXD11P31277 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms