Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PTCD1O75127 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PTCD1O75127 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC25.25■■□□□ 1.63
PTCD1O75127 BX664615.1-201ENST00000443558 458 ntBASIC25.25■■□□□ 1.63
PTCD1O75127 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC25.25■■□□□ 1.63
PTCD1O75127 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC25.25■■□□□ 1.63
PTCD1O75127 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC25.25■■□□□ 1.63
PTCD1O75127 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC25.25■■□□□ 1.63
PTCD1O75127 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC25.25■■□□□ 1.63
PTCD1O75127 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC25.25■■□□□ 1.63
PTCD1O75127 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC25.25■■□□□ 1.63
PTCD1O75127 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC25.25■■□□□ 1.63
PTCD1O75127 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PTCD1O75127 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
PTCD1O75127 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
PTCD1O75127 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC25.24■■□□□ 1.63
PTCD1O75127 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
PTCD1O75127 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC25.24■■□□□ 1.63
PTCD1O75127 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
PTCD1O75127 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
PTCD1O75127 AC117947.1-201ENST00000427448 529 ntBASIC25.24■■□□□ 1.63
PTCD1O75127 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC25.24■■□□□ 1.63
PTCD1O75127 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC25.24■■□□□ 1.63
PTCD1O75127 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
PTCD1O75127 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PTCD1O75127 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC25.23■■□□□ 1.63
PTCD1O75127 TMEM179-206ENST00000616017 1645 ntBASIC25.23■■□□□ 1.63
PTCD1O75127 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PTCD1O75127 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PTCD1O75127 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PTCD1O75127 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
PTCD1O75127 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC25.23■■□□□ 1.63
PTCD1O75127 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC25.23■■□□□ 1.63
PTCD1O75127 PTPA-216ENST00000432651 857 ntTSL 2 BASIC25.23■■□□□ 1.63
PTCD1O75127 FAM207BP-201ENST00000447172 505 ntBASIC25.23■■□□□ 1.63
PTCD1O75127 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PTCD1O75127 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC25.23■■□□□ 1.63
PTCD1O75127 AC091390.4-202ENST00000476426 537 ntBASIC25.23■■□□□ 1.63
PTCD1O75127 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC25.23■■□□□ 1.63
PTCD1O75127 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC25.23■■□□□ 1.63
PTCD1O75127 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC25.23■■□□□ 1.63
PTCD1O75127 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PTCD1O75127 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PTCD1O75127 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PTCD1O75127 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
PTCD1O75127 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
PTCD1O75127 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
PTCD1O75127 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC25.22■■□□□ 1.63
PTCD1O75127 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC25.22■■□□□ 1.63
PTCD1O75127 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC25.22■■□□□ 1.63
PTCD1O75127 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PTCD1O75127 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
PTCD1O75127 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
PTCD1O75127 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PTCD1O75127 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC25.22■■□□□ 1.63
PTCD1O75127 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC25.22■■□□□ 1.63
PTCD1O75127 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC25.22■■□□□ 1.63
PTCD1O75127 AC063952.2-201ENST00000498792 1227 ntBASIC25.22■■□□□ 1.63
PTCD1O75127 AC022616.7-201ENST00000525383 220 ntBASIC25.22■■□□□ 1.63
PTCD1O75127 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC25.22■■□□□ 1.63
PTCD1O75127 AC139887.4-201ENST00000607877 719 ntBASIC25.22■■□□□ 1.63
PTCD1O75127 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC25.22■■□□□ 1.63
PTCD1O75127 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC25.22■■□□□ 1.63
PTCD1O75127 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PTCD1O75127 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC25.22■■□□□ 1.63
PTCD1O75127 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PTCD1O75127 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
PTCD1O75127 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
PTCD1O75127 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC25.21■■□□□ 1.63
PTCD1O75127 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PTCD1O75127 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
PTCD1O75127 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC25.21■■□□□ 1.63
PTCD1O75127 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC25.21■■□□□ 1.63
PTCD1O75127 HMGA1P5-201ENST00000412453 271 ntBASIC25.21■■□□□ 1.63
PTCD1O75127 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC25.21■■□□□ 1.63
PTCD1O75127 AC116562.4-202ENST00000641738 218 ntBASIC25.21■■□□□ 1.63
PTCD1O75127 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
PTCD1O75127 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC25.21■■□□□ 1.63
PTCD1O75127 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC25.21■■□□□ 1.63
PTCD1O75127 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC25.21■■□□□ 1.63
PTCD1O75127 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PTCD1O75127 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC25.21■■□□□ 1.63
PTCD1O75127 AC096733.2-201ENST00000609937 1394 ntBASIC25.2■■□□□ 1.63
PTCD1O75127 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
PTCD1O75127 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
PTCD1O75127 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
PTCD1O75127 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC25.2■■□□□ 1.62
PTCD1O75127 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC25.2■■□□□ 1.62
PTCD1O75127 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
PTCD1O75127 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
PTCD1O75127 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PTCD1O75127 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC25.2■■□□□ 1.62
PTCD1O75127 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PTCD1O75127 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PTCD1O75127 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
PTCD1O75127 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
PTCD1O75127 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
PTCD1O75127 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC25.2■■□□□ 1.62
PTCD1O75127 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PTCD1O75127 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms