Protein–RNA interactions for Protein: O60885

BRD4, Bromodomain-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 1,362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRD4O60885 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC27.23■■□□□ 1.95
BRD4O60885 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
BRD4O60885 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
BRD4O60885 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
BRD4O60885 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC27.23■■□□□ 1.95
BRD4O60885 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
BRD4O60885 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
BRD4O60885 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC27.22■■□□□ 1.95
BRD4O60885 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC27.22■■□□□ 1.95
BRD4O60885 AL445228.2-201ENST00000605589 952 ntBASIC27.22■■□□□ 1.95
BRD4O60885 AC005363.2-201ENST00000618631 242 ntBASIC27.22■■□□□ 1.95
BRD4O60885 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC27.22■■□□□ 1.95
BRD4O60885 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
BRD4O60885 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC27.22■■□□□ 1.95
BRD4O60885 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
BRD4O60885 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
BRD4O60885 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC27.22■■□□□ 1.95
BRD4O60885 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
BRD4O60885 BX119927.1-201ENST00000636596 1552 ntBASIC27.22■■□□□ 1.95
BRD4O60885 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
BRD4O60885 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
BRD4O60885 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC27.22■■□□□ 1.95
BRD4O60885 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC27.22■■□□□ 1.95
BRD4O60885 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
BRD4O60885 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC27.22■■□□□ 1.95
BRD4O60885 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC27.22■■□□□ 1.95
BRD4O60885 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC27.22■■□□□ 1.95
BRD4O60885 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
BRD4O60885 ADM-207ENST00000530439 1839 ntTSL 2 BASIC27.21■■□□□ 1.95
BRD4O60885 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
BRD4O60885 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
BRD4O60885 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC27.21■■□□□ 1.95
BRD4O60885 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
BRD4O60885 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC27.21■■□□□ 1.95
BRD4O60885 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
BRD4O60885 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
BRD4O60885 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
BRD4O60885 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
BRD4O60885 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
BRD4O60885 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC27.21■■□□□ 1.95
BRD4O60885 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
BRD4O60885 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC27.21■■□□□ 1.95
BRD4O60885 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC27.2■■□□□ 1.95
BRD4O60885 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
BRD4O60885 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
BRD4O60885 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.95
BRD4O60885 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
BRD4O60885 AL391422.3-201ENST00000603791 2761 ntBASIC27.2■■□□□ 1.94
BRD4O60885 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.94
BRD4O60885 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC27.2■■□□□ 1.94
BRD4O60885 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
BRD4O60885 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
BRD4O60885 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC27.2■■□□□ 1.94
BRD4O60885 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC27.2■■□□□ 1.94
BRD4O60885 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC27.2■■□□□ 1.94
BRD4O60885 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC27.2■■□□□ 1.94
BRD4O60885 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC27.2■■□□□ 1.94
BRD4O60885 KRT8P17-201ENST00000453110 1448 ntBASIC27.2■■□□□ 1.94
BRD4O60885 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
BRD4O60885 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC27.2■■□□□ 1.94
BRD4O60885 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
BRD4O60885 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
BRD4O60885 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC27.19■■□□□ 1.94
BRD4O60885 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC27.19■■□□□ 1.94
BRD4O60885 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
BRD4O60885 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
BRD4O60885 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC27.19■■□□□ 1.94
BRD4O60885 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC27.19■■□□□ 1.94
BRD4O60885 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC27.19■■□□□ 1.94
BRD4O60885 NAPSB-206ENST00000562112 1266 ntBASIC27.19■■□□□ 1.94
BRD4O60885 AL445675.2-201ENST00000620291 557 ntBASIC27.19■■□□□ 1.94
BRD4O60885 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
BRD4O60885 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC27.18■■□□□ 1.94
BRD4O60885 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
BRD4O60885 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
BRD4O60885 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC27.18■■□□□ 1.94
BRD4O60885 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
BRD4O60885 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
BRD4O60885 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC27.18■■□□□ 1.94
BRD4O60885 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC27.18■■□□□ 1.94
BRD4O60885 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
BRD4O60885 AC112907.3-201ENST00000577781 2400 ntBASIC27.18■■□□□ 1.94
BRD4O60885 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
BRD4O60885 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
BRD4O60885 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
BRD4O60885 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
BRD4O60885 MIR1238-201ENST00000408483 83 ntBASIC27.18■■□□□ 1.94
BRD4O60885 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC27.18■■□□□ 1.94
BRD4O60885 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC27.18■■□□□ 1.94
BRD4O60885 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC27.18■■□□□ 1.94
BRD4O60885 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC27.18■■□□□ 1.94
BRD4O60885 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
BRD4O60885 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
BRD4O60885 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
BRD4O60885 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
BRD4O60885 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
BRD4O60885 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
BRD4O60885 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC27.17■■□□□ 1.94
BRD4O60885 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC27.17■■□□□ 1.94
BRD4O60885 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC27.17■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms