Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
SMKR1H3BMG3 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC14.33□□□□□ -0.11
SMKR1H3BMG3 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
SMKR1H3BMG3 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
SMKR1H3BMG3 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SMKR1H3BMG3 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SMKR1H3BMG3 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC14.33□□□□□ -0.12
SMKR1H3BMG3 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 UNC93B3-201ENST00000308076 687 ntBASIC14.33□□□□□ -0.12
SMKR1H3BMG3 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 BCL2-203ENST00000589955 5011 ntBASIC14.33□□□□□ -0.12
SMKR1H3BMG3 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SMKR1H3BMG3 COMP-202ENST00000425807 2292 ntTSL 2 BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 USP49-202ENST00000373010 2446 ntTSL 5 BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 AL390961.4-201ENST00000623958 2535 ntBASIC14.32□□□□□ -0.12
SMKR1H3BMG3 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 AC099791.1-201ENST00000416440 715 ntBASIC14.32□□□□□ -0.12
SMKR1H3BMG3 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 AC024257.2-201ENST00000549699 147 ntBASIC14.32□□□□□ -0.12
SMKR1H3BMG3 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SMKR1H3BMG3 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms