Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC26.45■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 Z99916.2-201ENST00000604037 246 ntBASIC26.45■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC26.45■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC26.45■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 TPM1-226ENST00000560959 925 ntTSL 2 BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 GATS-209ENST00000454084 1030 ntTSL 3 BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 FAM197Y4-202ENST00000622692 608 ntBASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC26.42■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC26.42■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC26.42■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC26.42■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC26.42■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC26.42■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC26.42■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 NXN-202ENST00000537628 1340 ntTSL 3 BASIC26.41■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC26.41■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC26.41■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC26.41■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC26.41■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC26.41■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 RMI2-205ENST00000576027 818 ntTSL 2 BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 AL590326.2-201ENST00000625139 305 ntBASIC26.4■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms