Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC10.5□□□□□ -0.73
SHROOM4Q9ULL8 AC078878.1-201ENST00000539832 958 ntBASIC10.5□□□□□ -0.73
SHROOM4Q9ULL8 AC092490.3-201ENST00000545370 572 ntBASIC10.5□□□□□ -0.73
SHROOM4Q9ULL8 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC10.5□□□□□ -0.73
SHROOM4Q9ULL8 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
SHROOM4Q9ULL8 UBA3-213ENST00000631029 123 ntTSL 5 BASIC10.5□□□□□ -0.73
SHROOM4Q9ULL8 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC10.5□□□□□ -0.73
SHROOM4Q9ULL8 GDA-209ENST00000545168 5362 ntTSL 2 BASIC10.5□□□□□ -0.73
SHROOM4Q9ULL8 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
SHROOM4Q9ULL8 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC10.5□□□□□ -0.73
SHROOM4Q9ULL8 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
SHROOM4Q9ULL8 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
SHROOM4Q9ULL8 TET1P1-201ENST00000426627 2301 ntBASIC10.5□□□□□ -0.73
SHROOM4Q9ULL8 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 RNU4-2-201ENST00000365668 141 ntBASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 RPL5P22-201ENST00000480199 884 ntBASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 BNIP3P1-201ENST00000547295 580 ntBASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 AC079075.1-201ENST00000559543 878 ntBASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 AGGF1P7-201ENST00000562369 913 ntBASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 DHFRP1-201ENST00000579682 559 ntBASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 AL353796.1-201ENST00000561542 3241 ntBASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 NPM1P25-201ENST00000429734 854 ntBASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 AC024940.3-201ENST00000538551 316 ntBASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 MIR3934-201ENST00000579806 107 ntBASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 AC095055.1-201ENST00000603472 1113 ntBASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
SHROOM4Q9ULL8 AC104964.3-201ENST00000606115 2860 ntBASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 INTS6P1-201ENST00000504674 2530 ntBASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 OR4K12P-201ENST00000406538 961 ntBASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 TPT1P12-201ENST00000448968 492 ntBASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 AC009963.2-201ENST00000453431 138 ntBASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 HNRNPDLP2-201ENST00000455248 751 ntBASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 RPS7P6-201ENST00000485777 579 ntBASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 RAB9BP1-201ENST00000519581 626 ntBASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 C1GALT1P3-201ENST00000522049 819 ntBASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 MIR5096-201ENST00000583713 70 ntBASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 CASC19-281ENST00000642118 1554 ntBASIC10.48□□□□□ -0.73
SHROOM4Q9ULL8 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 AL034546.1-201ENST00000623740 3693 ntBASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 AC096921.1-201ENST00000411661 375 ntBASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 RPS18P6-201ENST00000476880 458 ntBASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 AC112694.2-201ENST00000623697 768 ntBASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
SHROOM4Q9ULL8 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
SHROOM4Q9ULL8 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.73
SHROOM4Q9ULL8 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.73
SHROOM4Q9ULL8 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC10.46□□□□□ -0.73
SHROOM4Q9ULL8 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 DNAJA1P4-201ENST00000406473 1166 ntBASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 AC013410.1-201ENST00000436223 1232 ntBASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 STRADBP1-201ENST00000478954 1281 ntBASIC10.46□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms