Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 DNM1P47-203ENST00000571780 12667 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 RNU1-77P-201ENST00000390868 162 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 AC009804.1-201ENST00000400949 179 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 RN7SKP229-201ENST00000410465 302 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 CFL1P1-202ENST00000432948 411 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 SPRYD7P1-201ENST00000443861 570 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 AC011411.1-201ENST00000509592 876 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 RNU4-18P-201ENST00000516751 149 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 AC136777.2-201ENST00000522979 358 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 OR8Q1P-201ENST00000526467 655 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 AC126177.5-201ENST00000549599 178 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 RBM22P1-201ENST00000578589 1214 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 MIR4489-201ENST00000578869 62 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 AP000864.1-201ENST00000609424 650 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 AC109309.2-201ENST00000612597 332 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 AC005618.4-201ENST00000625053 554 ntBASIC5.53□□□□□ -1.52
LHX3Q9UBR4 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
LHX3Q9UBR4 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 U3.28-201ENST00000391249 210 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 NPM1P4-201ENST00000414095 812 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 CYCSP6-201ENST00000434498 302 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 AC099670.2-201ENST00000435130 321 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 AC073465.2-201ENST00000440938 498 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 RPS26P41-201ENST00000450370 284 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 RPL7P45-201ENST00000455851 743 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 RPEP1-201ENST00000504507 658 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 GLUD1P3-202ENST00000508551 200 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 AC109464.1-201ENST00000511091 819 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 AC091912.1-201ENST00000511351 248 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 SUMO2P19-201ENST00000518920 295 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 KCTD9P6-201ENST00000522306 950 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 OR4A17P-201ENST00000526032 904 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 AC007225.2-201ENST00000562529 256 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 IMMP1LP3-201ENST00000604197 224 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 AL512624.1-201ENST00000613638 469 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 AL353684.1-201ENST00000622677 1120 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 AC136428.4-201ENST00000634254 1155 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 AC137056.2-201ENST00000624055 1958 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 ICE2P1-201ENST00000512800 1849 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 AC079097.1-201ENST00000512187 1399 ntBASIC5.52□□□□□ -1.53
LHX3Q9UBR4 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
LHX3Q9UBR4 MSL3P1-202ENST00000440028 1468 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AL359715.3-201ENST00000569267 2123 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 RNA5SP183-201ENST00000362452 119 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 SNORD56.6-201ENST00000384569 71 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 CCL7-202ENST00000394627 696 ntTSL 3 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms