Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC092865.4-201ENST00000477936 615 ntBASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AOX3P-204ENST00000491025 2107 ntBASIC6.15□□□□□ -1.42
DKK3Q9UBP4 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC6.15□□□□□ -1.42
DKK3Q9UBP4 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AP003396.4-201ENST00000527574 265 ntBASIC6.15□□□□□ -1.42
DKK3Q9UBP4 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AC007956.1-201ENST00000555623 542 ntBASIC6.15□□□□□ -1.42
DKK3Q9UBP4 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.15□□□□□ -1.42
DKK3Q9UBP4 RPA2P1-201ENST00000556557 721 ntBASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AL049838.1-201ENST00000563647 981 ntBASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AC027281.1-201ENST00000574178 758 ntBASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AC068620.3-201ENST00000602749 560 ntBASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AL645933.2-201ENST00000606743 1207 ntBASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AP000864.1-201ENST00000609424 650 ntBASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AL365181.4-201ENST00000609800 547 ntBASIC6.15□□□□□ -1.42
DKK3Q9UBP4 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AC096861.1-201ENST00000616652 240 ntBASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AP003499.2-201ENST00000624100 483 ntBASIC6.15□□□□□ -1.42
DKK3Q9UBP4 AC008627.1-201ENST00000517511 1704 ntBASIC6.15□□□□□ -1.42
DKK3Q9UBP4 SEPT7P7-201ENST00000420492 1301 ntBASIC6.15□□□□□ -1.43
DKK3Q9UBP4 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
DKK3Q9UBP4 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
DKK3Q9UBP4 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
DKK3Q9UBP4 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
DKK3Q9UBP4 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC6.15□□□□□ -1.43
DKK3Q9UBP4 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
DKK3Q9UBP4 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
DKK3Q9UBP4 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
DKK3Q9UBP4 TMEM161BP1-201ENST00000457388 1457 ntBASIC6.15□□□□□ -1.43
DKK3Q9UBP4 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
DKK3Q9UBP4 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
DKK3Q9UBP4 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
DKK3Q9UBP4 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.43
DKK3Q9UBP4 MTCO1P28-201ENST00000574177 1528 ntBASIC6.15□□□□□ -1.43
DKK3Q9UBP4 AP000473.2-201ENST00000602659 1537 ntBASIC6.15□□□□□ -1.43
DKK3Q9UBP4 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 HSPD1P8-201ENST00000400121 1658 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 SNORA51.1-201ENST00000363243 140 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AL353625.1-202ENST00000366273 571 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 RNU6-40P-201ENST00000384254 107 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 GLS-203ENST00000409215 632 ntTSL 4 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 RN7SKP206-201ENST00000410823 293 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 RNU2-22P-201ENST00000411266 212 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 MTCO2P8-201ENST00000412213 658 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 HSD17B7P1-201ENST00000412419 1017 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC092570.3-201ENST00000420113 693 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 RPL12P43-201ENST00000420608 499 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AL645931.1-201ENST00000439737 410 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 ATP5LP2-201ENST00000440646 311 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC073594.1-201ENST00000462065 364 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC006539.1-201ENST00000481419 501 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 KCTD9P6-201ENST00000522306 950 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC027369.2-201ENST00000528030 440 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 OR4H6P-201ENST00000563771 921 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC090826.1-203ENST00000569235 490 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 MTATP6P24-201ENST00000576835 677 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC090236.2-201ENST00000587933 1101 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC023762.1-201ENST00000603280 584 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC108865.2-201ENST00000606881 432 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC004477.3-201ENST00000614061 590 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 TCP11X1-202ENST00000622971 1372 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 TOPORSLP1-201ENST00000467693 2102 ntBASIC6.14□□□□□ -1.43
DKK3Q9UBP4 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
DKK3Q9UBP4 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms