Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 AC006133.1-201ENST00000617106 264 ntBASIC5.12□□□□□ -1.59
VPS13AQ96RL7 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 UTY-203ENST00000362096 4990 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 WDR7-202ENST00000357574 7213 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 AC022034.1-201ENST00000512867 2156 ntBASIC5.12□□□□□ -1.59
VPS13AQ96RL7 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 SLITRK1-201ENST00000377084 5189 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 SIM1-202ENST00000369208 8430 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 KIAA1328-207ENST00000591619 5881 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 RNU1-64P-201ENST00000365443 163 ntBASIC5.12□□□□□ -1.59
VPS13AQ96RL7 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 RSU1P3-201ENST00000412878 835 ntBASIC5.12□□□□□ -1.59
VPS13AQ96RL7 OR2B7P-201ENST00000429302 934 ntBASIC5.12□□□□□ -1.59
VPS13AQ96RL7 RPS27AP12-201ENST00000429552 465 ntBASIC5.12□□□□□ -1.59
VPS13AQ96RL7 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 ZNF652P1-201ENST00000442420 1309 ntBASIC5.12□□□□□ -1.59
VPS13AQ96RL7 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 RPL12P20-201ENST00000475538 479 ntBASIC5.12□□□□□ -1.59
VPS13AQ96RL7 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.12□□□□□ -1.59
VPS13AQ96RL7 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 MPP7-203ENST00000375732 5063 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 TRPS1-201ENST00000220888 5480 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 BRD7P6-201ENST00000431406 1860 ntBASIC5.12□□□□□ -1.59
VPS13AQ96RL7 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 HSPA8P15-201ENST00000401676 786 ntBASIC5.12□□□□□ -1.59
VPS13AQ96RL7 MAST4-207ENST00000407621 559 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS13AQ96RL7 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 PCDH15-233ENST00000621708 5700 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 FAM13A-201ENST00000264344 5858 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 ST13P16-201ENST00000401760 781 ntBASIC5.11□□□□□ -1.59
VPS13AQ96RL7 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 AC073143.1-201ENST00000436316 395 ntBASIC5.11□□□□□ -1.59
VPS13AQ96RL7 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 RN7SL423P-201ENST00000486202 304 ntBASIC5.11□□□□□ -1.59
VPS13AQ96RL7 AC137627.1-201ENST00000545761 289 ntBASIC5.11□□□□□ -1.59
VPS13AQ96RL7 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 PLCXD2-205ENST00000636933 7710 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 HIVEP2-201ENST00000012134 9755 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 AC100757.1-201ENST00000616872 1835 ntBASIC5.11□□□□□ -1.59
VPS13AQ96RL7 PEG10-208ENST00000615790 6394 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.11□□□□□ -1.59
VPS13AQ96RL7 PLEKHG4B-201ENST00000283426 11515 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 RN7SKP224-201ENST00000364140 325 ntBASIC5.11□□□□□ -1.59
VPS13AQ96RL7 AC096921.1-201ENST00000411661 375 ntBASIC5.11□□□□□ -1.59
VPS13AQ96RL7 NIFKP7-201ENST00000503365 834 ntBASIC5.11□□□□□ -1.59
VPS13AQ96RL7 SCARNA20.4-201ENST00000516969 131 ntBASIC5.11□□□□□ -1.59
VPS13AQ96RL7 IGKV2-23-201ENST00000518729 323 ntBASIC5.11□□□□□ -1.59
VPS13AQ96RL7 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 MIR4298-201ENST00000584380 73 ntBASIC5.11□□□□□ -1.59
VPS13AQ96RL7 AC105254.2-201ENST00000603636 436 ntBASIC5.11□□□□□ -1.59
VPS13AQ96RL7 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS13AQ96RL7 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.1□□□□□ -1.59
VPS13AQ96RL7 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
VPS13AQ96RL7 MIR600-201ENST00000385007 98 ntBASIC5.1□□□□□ -1.59
VPS13AQ96RL7 MIR105-1-201ENST00000385222 81 ntBASIC5.1□□□□□ -1.59
VPS13AQ96RL7 AP002530.1-201ENST00000405705 684 ntBASIC5.1□□□□□ -1.59
VPS13AQ96RL7 AL009179.1-201ENST00000406085 265 ntBASIC5.1□□□□□ -1.59
VPS13AQ96RL7 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS13AQ96RL7 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC5.1□□□□□ -1.59
VPS13AQ96RL7 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS13AQ96RL7 AC058823.1-201ENST00000485315 474 ntBASIC5.1□□□□□ -1.59
VPS13AQ96RL7 AC007224.1-201ENST00000564410 144 ntBASIC5.1□□□□□ -1.59
VPS13AQ96RL7 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS13AQ96RL7 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC5.1□□□□□ -1.59
VPS13AQ96RL7 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
VPS13AQ96RL7 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.1□□□□□ -1.59
VPS13AQ96RL7 AC006206.1-201ENST00000544842 3387 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms