Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 HSPD1P9-201ENST00000420325 1636 ntBASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 AC022164.1-201ENST00000568767 2673 ntBASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 AC005702.3-201ENST00000585345 1447 ntBASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 AC092070.2-203ENST00000598377 3644 ntBASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
PDLIM3Q53GG5 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AP001541.1-201ENST00000623322 1904 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 HMGB3P7-201ENST00000400214 611 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AL365220.1-201ENST00000432923 399 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 ZNF736P1Y-201ENST00000440402 1276 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 snoU13.29-201ENST00000459370 104 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC023194.2-201ENST00000465398 406 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 RN7SL643P-201ENST00000471845 291 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC090058.1-201ENST00000498788 435 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC093815.1-201ENST00000508637 280 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC117525.1-201ENST00000515228 503 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 RN7SKP35-201ENST00000517210 151 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 MTND1P36-201ENST00000522384 936 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AL133399.1-201ENST00000527476 298 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC074029.2-201ENST00000551045 634 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC074050.1-201ENST00000563247 211 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC026898.1-201ENST00000586404 571 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 OR4H6P-202ENST00000603819 340 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 SUMO2P15-201ENST00000604285 278 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 HMGB1P51-201ENST00000605166 638 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC020978.9-201ENST00000624380 1141 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 DDX6P1-205ENST00000441966 1436 ntBASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
PDLIM3Q53GG5 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 Y_RNA.110-201ENST00000363220 99 ntBASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 AC003045.1-201ENST00000398779 713 ntBASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 AL139805.1-201ENST00000407837 289 ntBASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 AL355433.1-201ENST00000422804 300 ntBASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
PDLIM3Q53GG5 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms