Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC073575.2-201ENST00000614212 627 ntBASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 OR55B1P-203ENST00000641518 2602 ntBASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 AL049693.1-201ENST00000402760 611 ntBASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 AL049745.1-201ENST00000433953 286 ntBASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 GAPDHP25-201ENST00000447061 1001 ntBASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 AC097484.1-201ENST00000471148 389 ntBASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 OR5AN2P-201ENST00000534535 896 ntBASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 AL356752.1-201ENST00000615844 593 ntBASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 ZNF969P-201ENST00000510345 2341 ntBASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 SNORA17.1-201ENST00000362945 126 ntBASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 SRSF1P1-201ENST00000424058 520 ntBASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 AL390879.1-201ENST00000439143 386 ntBASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 AL138878.2-201ENST00000440581 1241 ntBASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 AC083809.1-201ENST00000615051 472 ntBASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 WBP1LP8-201ENST00000617401 327 ntBASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 PLEKHG1-201ENST00000358517 7138 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC88AQ3V6T2 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 RNU1-32P-201ENST00000363937 159 ntBASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 IGBP1P3-201ENST00000447449 1000 ntBASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 AC073264.2-201ENST00000448886 166 ntBASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 AC021106.1-201ENST00000509020 1058 ntBASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 ZNRD1ASP-221ENST00000637794 1074 ntBASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 AC083899.1-201ENST00000454465 3819 ntBASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC88AQ3V6T2 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 SNORA51.8-201ENST00000384234 132 ntBASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 AL356967.1-201ENST00000406305 431 ntBASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 HMGB1P40-201ENST00000525121 540 ntBASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 AGGF1P7-201ENST00000562369 913 ntBASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 AC015660.5-201ENST00000623238 564 ntBASIC6.66□□□□□ -1.34
CCDC88AQ3V6T2 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC6.66□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms